PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM6G257110_P01 | ||||||||
Common Name | LOC100382573 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 371aa MW: 40677.2 Da PI: 8.3469 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.2 | 1.1e-51 | 21 | 160 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdee+++ yL +k+ + ++ ++i evd++k+ePwdLp+ k+ + ++kewyfF+++ ky+tg+r+nratk+gyWkatgkd GRMZM6G257110_P01 21 LPPGFRFHPTDEEVITSYLLQKLLNPSFAP-HAIGEVDLNKCEPWDLPSkaKMGEeDSKEWYFFCRKGMKYPTGTRANRATKEGYWKATGKD 111 79*************************888.78**************952344332445********************************* PP NAM 90 kevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e++ k +++lvg+kktLvfy+grap+g+kt+Wvmhe+rl GRMZM6G257110_P01 112 REIFFKpaaghddvdrREQLVGMKKTLVFYTGRAPRGTKTNWVMHEFRL 160 ****9999999888877788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-56 | 17 | 195 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.183 | 21 | 195 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-26 | 22 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MVEPSVKSSE HGGGGIDLLF LPPGFRFHPT DEEVITSYLL QKLLNPSFAP HAIGEVDLNK 60 CEPWDLPSKA KMGEEDSKEW YFFCRKGMKY PTGTRANRAT KEGYWKATGK DREIFFKPAA 120 GHDDVDRREQ LVGMKKTLVF YTGRAPRGTK TNWVMHEFRL IEGKGKYSRH RTTNDDLLLR 180 FNPKDEWVVC KVHHKGGRHD ASAAKKGGGG GGGEEQQYSS AAGTPNVSSV EAGGGGDDDE 240 FLLDSVLLDY SSSCHFNSSG PTACTSSSRS RSMPPPRRHA PPADQQQAIM VGGSYYYTSL 300 HHHHQEMVAP TRFAAAAGLP SACASAAGAG AAQRSSQQHG VLQQQRLPAG NYNYYDDGGN 360 YYAAGYRTSQ Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-47 | 19 | 195 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-47 | 19 | 195 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-47 | 19 | 195 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-47 | 19 | 195 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-47 | 19 | 195 | 18 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-47 | 19 | 195 | 18 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-47 | 19 | 195 | 18 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-47 | 19 | 195 | 18 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-47 | 19 | 195 | 18 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-47 | 19 | 195 | 18 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-47 | 19 | 195 | 18 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-47 | 19 | 195 | 18 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-47 | 19 | 195 | 15 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-47 | 19 | 195 | 15 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.137034 | 0.0 | cell culture |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM6G257110 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Predominantly expressed in developing vascular tissue of the leaves and roots, and in developing flowers. {ECO:0000269|PubMed:15654622}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in phloem. {ECO:0000269|PubMed:15654622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM6G257110_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064790 | 0.0 | BT064790.1 Zea mays full-length cDNA clone ZM_BFb0136F19 mRNA, complete cds. | |||
GenBank | HQ858741 | 0.0 | HQ858741.1 Zea mays clone UT1439 NAC family member mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001168776.1 | 0.0 | NAC family member | ||||
Swissprot | Q5CD17 | 2e-90 | NAC77_ORYSJ; NAC domain-containing protein 77 | ||||
TrEMBL | C0P921 | 0.0 | C0P921_MAIZE; NAC family member | ||||
STRING | GRMZM6G257110_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5120 | 30 | 63 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 3e-71 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM6G257110_P01 |
Entrez Gene | 100382573 |