PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM6G257110_P01
Common NameLOC100382573
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 371aa    MW: 40677.2 Da    PI: 8.3469
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM6G257110_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.1e-51211601128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        lppGfrFhPtdee+++ yL +k+ + ++   ++i evd++k+ePwdLp+  k+ + ++kewyfF+++  ky+tg+r+nratk+gyWkatgkd
  GRMZM6G257110_P01  21 LPPGFRFHPTDEEVITSYLLQKLLNPSFAP-HAIGEVDLNKCEPWDLPSkaKMGEeDSKEWYFFCRKGMKYPTGTRANRATKEGYWKATGKD 111
                        79*************************888.78**************952344332445********************************* PP

                NAM  90 kevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +e++ k          +++lvg+kktLvfy+grap+g+kt+Wvmhe+rl
  GRMZM6G257110_P01 112 REIFFKpaaghddvdrREQLVGMKKTLVFYTGRAPRGTKTNWVMHEFRL 160
                        ****9999999888877788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-5617195IPR003441NAC domain
PROSITE profilePS5100554.18321195IPR003441NAC domain
PfamPF023651.0E-2622160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MVEPSVKSSE HGGGGIDLLF LPPGFRFHPT DEEVITSYLL QKLLNPSFAP HAIGEVDLNK  60
CEPWDLPSKA KMGEEDSKEW YFFCRKGMKY PTGTRANRAT KEGYWKATGK DREIFFKPAA  120
GHDDVDRREQ LVGMKKTLVF YTGRAPRGTK TNWVMHEFRL IEGKGKYSRH RTTNDDLLLR  180
FNPKDEWVVC KVHHKGGRHD ASAAKKGGGG GGGEEQQYSS AAGTPNVSSV EAGGGGDDDE  240
FLLDSVLLDY SSSCHFNSSG PTACTSSSRS RSMPPPRRHA PPADQQQAIM VGGSYYYTSL  300
HHHHQEMVAP TRFAAAAGLP SACASAAGAG AAQRSSQQHG VLQQQRLPAG NYNYYDDGGN  360
YYAAGYRTSQ Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-471919515165NO APICAL MERISTEM PROTEIN
1ut4_B3e-471919515165NO APICAL MERISTEM PROTEIN
1ut7_A3e-471919515165NO APICAL MERISTEM PROTEIN
1ut7_B3e-471919515165NO APICAL MERISTEM PROTEIN
3swm_A4e-471919518168NAC domain-containing protein 19
3swm_B4e-471919518168NAC domain-containing protein 19
3swm_C4e-471919518168NAC domain-containing protein 19
3swm_D4e-471919518168NAC domain-containing protein 19
3swp_A4e-471919518168NAC domain-containing protein 19
3swp_B4e-471919518168NAC domain-containing protein 19
3swp_C4e-471919518168NAC domain-containing protein 19
3swp_D4e-471919518168NAC domain-containing protein 19
4dul_A3e-471919515165NAC domain-containing protein 19
4dul_B3e-471919515165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1370340.0cell culture
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM6G257110
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Predominantly expressed in developing vascular tissue of the leaves and roots, and in developing flowers. {ECO:0000269|PubMed:15654622}.
UniprotTISSUE SPECIFICITY: Expressed in phloem. {ECO:0000269|PubMed:15654622}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM6G257110_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0647900.0BT064790.1 Zea mays full-length cDNA clone ZM_BFb0136F19 mRNA, complete cds.
GenBankHQ8587410.0HQ858741.1 Zea mays clone UT1439 NAC family member mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168776.10.0NAC family member
SwissprotQ5CD172e-90NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLC0P9210.0C0P921_MAIZE; NAC family member
STRINGGRMZM6G257110_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.23e-71Arabidopsis NAC domain containing protein 87