PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G899865_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 316aa MW: 34557.7 Da PI: 4.9543 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.3 | 1.4e-08 | 284 | 310 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 hn ErrRRdri++++ L+el+P++ GRMZM5G899865_P01 284 VHNLSERRRRDRIKEKMLVLQELIPHC 310 6************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02519 | 1.4E-24 | 76 | 157 | IPR003676 | Small auxin-up RNA |
CDD | cd00083 | 1.19E-6 | 276 | 314 | No hit | No description |
SuperFamily | SSF47459 | 4.84E-8 | 278 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.715 | 280 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-8 | 284 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-6 | 284 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MPPTPNPKNL AASLPILTLG GGASGGGRPP SKFESATVDL PTSVILLAAV DRGSDEMAPP 60 DPEDGSREEK RTKASKLQEQ GEGEEEATGL PSDVPRGHFA VYVGERRRRF VVPITLLDRP 120 EFRYLLRRAK EEFGFTSAGG ALVLPCEEVA FCSLTSALAC ARPRPAPPSD RDPLGTSDIT 180 AEETAAWFPD TLDDPLEKDL YTQLWYSTIA DAAPQHEGTF PGPTSHPSPP LPPVGSSNVE 240 SSWAGDICST FCDNNQDVEC KEANEETKPW QRNGPKRRTR AAEVHNLSER RRRDRIKEKM 300 LVLQELIPHC NKVQVP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 109 | ERRRRF |
2 | 275 | 292 | KRRTRAAEVHNLSERRRR |
3 | 288 | 293 | ERRRRD |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G899865 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G899865_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061290 | 2e-84 | BT061290.1 Zea mays full-length cDNA clone ZM_BFb0131L15 mRNA, complete cds. | |||
GenBank | EU970007 | 2e-84 | EU970007.1 Zea mays clone 338472 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1D6L1V9 | 0.0 | A0A1D6L1V9_MAIZE; SAUR-like auxin-responsive protein family | ||||
STRING | GRMZM5G899865_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3174 | 34 | 82 | Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 4e-15 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G899865_P01 |