PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G898290_P01
Common NameNAC40, ZEAMMB73_002174, Zm.34986
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 348aa    MW: 38019.1 Da    PI: 7.1616
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G898290_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.92.3e-54151401128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+++yL++k+++ ++   +++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e+
  GRMZM5G898290_P01  15 LPPGFRFHPTDEELITHYLARKAADARFAP-RAVGEADLNKCEPWDLPSRATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDREI 105
                        79*************************988.88***************988899************************************** PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++ +++lvg+kktLvfy+grap+g kt Wvmheyrl
  GRMZM5G898290_P01 106 FR-SKALVGMKKTLVFYTGRAPRGGKTGWVMHEYRL 140
                        **.999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.23E-648172IPR003441NAC domain
PROSITE profilePS5100558.82815172IPR003441NAC domain
PfamPF023659.5E-3016140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020127anatomyprimary root
PO:0007112developmental stage1 main shoot growth stage
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEHDVHHQHQ QAMELPPGFR FHPTDEELIT HYLARKAADA RFAPRAVGEA DLNKCEPWDL  60
PSRATMGEKE WYFFCVKDRK YPTGLRTNRA TESGYWKATG KDREIFRSKA LVGMKKTLVF  120
YTGRAPRGGK TGWVMHEYRL HGKHASSSRL MPSSVRAGAS KDEWVLCRVF KKSIEPPPSV  180
GKRSSVACTG TMVVEDVVGP PSMSMEDDLT ACALPPLMDV SGGGGANMAA ASIELLAPPA  240
PHVTCFSNAL EGQFFLNPPC LHPSTSPLRL ASMVQAQAQA QYDGDAGMVL QLLQEAGGWY  300
SKLGEGERLS GGASQDTGVT SEVNVNPAEI SSTRHHIMDP EAASFWGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-571317215165NO APICAL MERISTEM PROTEIN
1ut4_B4e-571317215165NO APICAL MERISTEM PROTEIN
1ut7_A4e-571317215165NO APICAL MERISTEM PROTEIN
1ut7_B4e-571317215165NO APICAL MERISTEM PROTEIN
3swm_A4e-571317218168NAC domain-containing protein 19
3swm_B4e-571317218168NAC domain-containing protein 19
3swm_C4e-571317218168NAC domain-containing protein 19
3swm_D4e-571317218168NAC domain-containing protein 19
3swp_A4e-571317218168NAC domain-containing protein 19
3swp_B4e-571317218168NAC domain-containing protein 19
3swp_C4e-571317218168NAC domain-containing protein 19
3swp_D4e-571317218168NAC domain-containing protein 19
4dul_A4e-571317215165NAC domain-containing protein 19
4dul_B4e-571317215165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.349860.0meristem| ovary| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G898290
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G898290_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0658980.0BT065898.1 Zea mays full-length cDNA clone ZM_BFb0063K15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354931.10.0uncharacterized protein LOC100281380
RefseqXP_008677193.10.0NAC domain protein NAC5 isoform X1
TrEMBLC0PC790.0C0PC79_MAIZE; NAC domain-containing protein 79
STRINGGRMZM5G898290_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.14e-84NAC domain containing protein 100
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]