PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G898290_P01 | ||||||||
Common Name | NAC40, ZEAMMB73_002174, Zm.34986 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 348aa MW: 38019.1 Da PI: 7.1616 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.9 | 2.3e-54 | 15 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yL++k+++ ++ +++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e+ GRMZM5G898290_P01 15 LPPGFRFHPTDEELITHYLARKAADARFAP-RAVGEADLNKCEPWDLPSRATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDREI 105 79*************************988.88***************988899************************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++lvg+kktLvfy+grap+g kt Wvmheyrl GRMZM5G898290_P01 106 FR-SKALVGMKKTLVFYTGRAPRGGKTGWVMHEYRL 140 **.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.23E-64 | 8 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.828 | 15 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-30 | 16 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MEHDVHHQHQ QAMELPPGFR FHPTDEELIT HYLARKAADA RFAPRAVGEA DLNKCEPWDL 60 PSRATMGEKE WYFFCVKDRK YPTGLRTNRA TESGYWKATG KDREIFRSKA LVGMKKTLVF 120 YTGRAPRGGK TGWVMHEYRL HGKHASSSRL MPSSVRAGAS KDEWVLCRVF KKSIEPPPSV 180 GKRSSVACTG TMVVEDVVGP PSMSMEDDLT ACALPPLMDV SGGGGANMAA ASIELLAPPA 240 PHVTCFSNAL EGQFFLNPPC LHPSTSPLRL ASMVQAQAQA QYDGDAGMVL QLLQEAGGWY 300 SKLGEGERLS GGASQDTGVT SEVNVNPAEI SSTRHHIMDP EAASFWGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-57 | 13 | 172 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-57 | 13 | 172 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-57 | 13 | 172 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-57 | 13 | 172 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-57 | 13 | 172 | 18 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-57 | 13 | 172 | 18 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-57 | 13 | 172 | 18 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-57 | 13 | 172 | 18 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-57 | 13 | 172 | 18 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-57 | 13 | 172 | 18 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-57 | 13 | 172 | 18 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-57 | 13 | 172 | 18 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-57 | 13 | 172 | 15 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-57 | 13 | 172 | 15 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.34986 | 0.0 | meristem| ovary| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G898290 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G898290_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065898 | 0.0 | BT065898.1 Zea mays full-length cDNA clone ZM_BFb0063K15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001354931.1 | 0.0 | uncharacterized protein LOC100281380 | ||||
Refseq | XP_008677193.1 | 0.0 | NAC domain protein NAC5 isoform X1 | ||||
TrEMBL | C0PC79 | 0.0 | C0PC79_MAIZE; NAC domain-containing protein 79 | ||||
STRING | GRMZM5G898290_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2730 | 37 | 87 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 4e-84 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G898290_P01 |
Entrez Gene | 100281380 |
Publications ? help Back to Top | |||
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