PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G896413_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 187aa    MW: 21424 Da    PI: 6.9216
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G896413_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.77.7e-07148175330
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                HLH   3 rahnerErrRRdriNsafeeLrellPka 30 
                        + h ++Er+RR+++ + f +L +++P +
  GRMZM5G896413_P01 148 QEHVIAERKRREKMQQQFVTLATIVPDL 175
                        5799**********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.76E-6138176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.708145187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-4148175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-6148175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDELNKWRHL HPDPEDELAY MYRQQEEDHA GMQQQHHHFA ERLPEQQQYY TPPPPVAPPT  60
SSSPFLPRLH HTSNFPGFGD PAVPPRLPFR PAKNEPGQPS SSSNRILSFG GQPPSTLNFS  120
GGDWTEAGVE AVQQMPPDRR SRTHWNTQEH VIAERKRREK MQQQFVTLAT IVPDLTKVMH  180
ISCLVVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158ERKRRE
2154159RKRREK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G896413
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G896413_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020401340.11e-121transcription factor bHLH18 isoform X1
RefseqXP_020401343.11e-121transcription factor bHLH18 isoform X2
TrEMBLA0A1D6JUB21e-136A0A1D6JUB2_MAIZE; Transcription factor bHLH18
STRINGGRMZM5G896413_P011e-137(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Representative plantOGRP1197445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-10bHLH family protein