PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G895672_P01 | ||||||||
Common Name | GRAS43, LOC103655011, ZEAMMB73_683057 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRAS | ||||||||
Protein Properties | Length: 645aa MW: 72101.2 Da PI: 6.8419 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 292.8 | 9.2e-90 | 264 | 635 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 lL++cAea++++d++ a +lL r+++++sp+gd+++Rla++ft++L+arl++++s++yk l ++ + +++l++++++ +s ++ + GRMZM5G895672_P01 264 HALLIQCAEAMATNDQQGAANLLLRIRHHSSPTGDATRRLAHCFTQGLEARLMGTGSHMYKLLLAKCRA---ATSTLKVYQMYMAASSVFPV 352 579**********************************************************99888887...78999*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 s+l+ N+ ++a++g +++Hi+ +++++G++ p Ll+ L+sR++gpp++RiTg+++p +g + +eetg+rL++ A++++vpf+f++ +a GRMZM5G895672_P01 353 SFLLSNRIAYNAIAGRQKLHIVHYGLGHGFHLPDLLRMLSSREGGPPEVRITGIDNPLPGfhPGHIIEETGRRLSDCARQFRVPFKFRA-IA 443 *********************************************************999999999***********************.79 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +le++ e+L+++p+E+l+V +++ ++l+desv+++ +rd+vLk + +++P+v+++ + +++++ F+ rf eal+y++a+fd++++ GRMZM5G895672_P01 444 AKLEAVCAEDLDIDPDEVLVVISHFCFKNLMDESVTVDRpnPRDTVLKNIANMRPEVFIHDILNGSYSGAFFVSRFREALKYFAAMFDAMDT 535 9********************************999887779************************************************** PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365 +p+e+++r E+ l+ ++n+vaceg +r+ r ++++W+ r ++aG++++pl+ ++++ k +++ + + ++e++++l+ gWk+r GRMZM5G895672_P01 536 IMPQENQNRLLAEKW-LAMCVMNIVACEGVDRVSRPHSYKQWQVRSKRAGLRQLPLDPNIVQMSKDKVKEEYHKYIVINEDHEWLLTGWKGR 626 ********9999987.********************************************************8989999************* PP GRAS 366 pLvsvSaWr 374 L ++S W+ GRMZM5G895672_P01 627 VLSAFSTWT 635 ********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 49.441 | 237 | 615 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.2E-87 | 264 | 635 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 645 aa Download sequence Send to blast |
MRIPPELLSS ETQPQTAAPP SPSPSPYLDL PPAPHADNAK DDLSYISHML MEEDIVVDNL 60 YHRYRNHPML LSAEQPFAQI LCANATSDAI ATDISVQPYP LQSSVPTPEY YSYSDMVTSN 120 SMHVHQDASS LLVNGSTHEA ESSGMDMISM AFYKGMEDAT KLLITSKTHS DTLDRDRGRK 180 KRLQEAKDGV GVAMGRSSKQ KAVQWQPGSE EEAAACEMLD QLMLSDEPSH AGKQRELISS 240 MKLEKPQERR RGGAAGLSHT VDLHALLIQC AEAMATNDQQ GAANLLLRIR HHSSPTGDAT 300 RRLAHCFTQG LEARLMGTGS HMYKLLLAKC RAATSTLKVY QMYMAASSVF PVSFLLSNRI 360 AYNAIAGRQK LHIVHYGLGH GFHLPDLLRM LSSREGGPPE VRITGIDNPL PGFHPGHIIE 420 ETGRRLSDCA RQFRVPFKFR AIAAKLEAVC AEDLDIDPDE VLVVISHFCF KNLMDESVTV 480 DRPNPRDTVL KNIANMRPEV FIHDILNGSY SGAFFVSRFR EALKYFAAMF DAMDTIMPQE 540 NQNRLLAEKW LAMCVMNIVA CEGVDRVSRP HSYKQWQVRS KRAGLRQLPL DPNIVQMSKD 600 KVKEEYHKYI VINEDHEWLL TGWKGRVLSA FSTWTADDVR SGLSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 9e-36 | 269 | 635 | 24 | 378 | Protein SCARECROW |
5b3h_D | 9e-36 | 269 | 635 | 24 | 378 | Protein SCARECROW |
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Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G895672 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G895672_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728036 | 0.0 | KJ728036.1 Zea mays clone pUT6180 GRAS transcription factor (GRAS43) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008680054.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | K7TU12 | 0.0 | K7TU12_MAIZE; GRAS transcription factor | ||||
STRING | GRMZM5G895672_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 | Representative plant | OGRP19815 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-121 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G895672_P01 |
Entrez Gene | 103655011 |