PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G894234_P01
Common NameNAC102, ZEAMMB73_984613, Zm.36994
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 361aa    MW: 40175.8 Da    PI: 4.6659
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G894234_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.61.3e-19241531128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                        lp+G++F+P+d++l+  +L+++v +         +e+ +++++v + + ++P+++p  v+++ +  yfF+++ + y +++  n       Wk
  GRMZM5G894234_P01  24 LPRGVEFNPSDSDLL-WHLAAEVGNALaerhpfiNEFIKFVDDVrEFICTHPQHIP-GVRQDGRASYFFHRSFEPYINENDVNN-----CWK 108
                        699************.7788888776655656633333357787778999******.677888999**********98766666.....5** PP

                NAM  85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                        + g+ ++++  +g+l+g+k+++++y    +++++++tdW +h+y+l
  GRMZM5G894234_P01 109 KIGSPRSIIL-DGTLTGCKEVFALYadMPSDKRSQETDWRLHQYHL 153
                        **********.999***********5434788889**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-2315170IPR003441NAC domain
PROSITE profilePS5100521.68524171IPR003441NAC domain
PfamPF023652.4E-825153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MLMSFAGSAP DPTILMFSES WPGLPRGVEF NPSDSDLLWH LAAEVGNALA ERHPFINEFI  60
KFVDDVREFI CTHPQHIPGV RQDGRASYFF HRSFEPYINE NDVNNCWKKI GSPRSIILDG  120
TLTGCKEVFA LYADMPSDKR SQETDWRLHQ YHLQNTVKAE SEIVASKIFL ASRNSLCELA  180
EETHIESEWD VSTHKDSSVE CAKGFNPEIC TETDELDHIS LKERYRILLA DKSLGLTTVS  240
AGKSIMHVET SRASPKRNHE GKISKEDIFS MLQEISSAPS IIESNPMDDD SNRRILGEDL  300
PVEGSENQIG GTATCMGENS ELVARKQGAH LADVKLEPAL GGYEIGPSEL PQENSTHAEG  360
S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.369940.0pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G894234
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G894234_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278480.0KJ727848.1 Zea mays clone pUT5892 NAC transcription factor (NAC102) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020400064.10.0uncharacterized protein LOC103640404
TrEMBLA0A1D6PGT30.0A0A1D6PGT3_MAIZE; NAC domain-containing protein 8
STRINGGRMZM5G894234_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Representative plantOGRP365846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.13e-36NAC family protein