PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G889719_P01
Common Namedreb1, EREB1, ZEAMMB73_897594
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 281aa    MW: 29346.6 Da    PI: 4.6279
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G889719_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.5e-1794143255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  GRMZM5G889719_P01  94 TFRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 143
                        59****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.97294151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-3294152IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-2194152IPR016177DNA-binding domain
SMARTSM003801.0E-3594157IPR001471AP2/ERF domain
PRINTSPR003674.7E-1095106IPR001471AP2/ERF domain
PfamPF008477.2E-1295143IPR001471AP2/ERF domain
CDDcd000181.56E-2895153No hitNo description
PRINTSPR003674.7E-10117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAQELHETSS CSATTTSSCT TSCCSSTVTD SSSSPPSPAA ANAAPATRKR QALEAEAEAE  60
AGGEEEEEEE EGCAGNKAAP AKKRPRGSEG KHPTFRGVRM RAWGKWVSEI REPRKKSRIW  120
LGTFPTAEMA ARAHDVAALA IKGRAAHLNF PDLAGALPRA ASAAPKDVQA AAALAAAFTS  180
PSSEPGAGAH EEPAAKDGAA PEEAAADAQA PVPVALPPPA ASRPGTPSSG VEDERQLFDL  240
PDLLLDIRDG FGRFPPMWAP LTDVEEVVNA ELRLEEPLLW E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1886151672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086AKKRPRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.94180.0endosperm| glume| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G889719
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. HDACs positively regulate the expression of the cold-induced ZmDREB1 gene.
    [PMID: 21811564]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G889719_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4487890.0AF448789.1 Zea mays DREB-like protein (dreb1) mRNA, complete cds.
GenBankBT0651850.0BT065185.2 Zea mays full-length cDNA clone ZM_BFb0024M03 mRNA, complete cds.
GenBankBT0664250.0BT066425.2 Zea mays full-length cDNA clone ZM_BFc0155E15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105081.10.0DREB-like protein
SwissprotQ8LBQ73e-49ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A3L6DFD80.0A0A3L6DFD8_MAIZE; Ethylene-responsive transcription factor ERF034
TrEMBLQ8GZQ50.0Q8GZQ5_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM5G889719_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-35ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu Y, et al.
    Trichostatin A selectively suppresses the cold-induced transcription of the ZmDREB1 gene in maize.
    PLoS ONE, 2011. 6(7): p. e22132
    [PMID:21811564]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]