PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G889326_P01
Common NameGRAS77, LOC103630207
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 486aa    MW: 52641.4 Da    PI: 7.2535
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G889326_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS244.83.4e-75864795374
               GRAS   5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                        + +c++a+++g++e+ +++La ls  +s dgdp+qRl++ fteALa+r ++   ++l  a++ +  ++   + +  a++ f+ +sP+l+ + 
  GRMZM5G889326_P01  86 MQHCVRAMEAGNTEASNNALAALSSVSSLDGDPIQRLTSAFTEALARRALEpLLQGLPWAIKEQLRRPPPPAYADVARQWFHTLSPLLRAAG 177
                        568*********************************************9996778888888888777777888888999************* PP

               GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl..va 183
                        l+aN+aI++a+ege+ vH++D++  ++ QW+ Ll+ La+Rp+g+p  slR+T v++    ++  l+     L+  A++l+vp+  n++  + 
  GRMZM5G889326_P01 178 LAANHAIVKALEGEQDVHVVDLGGANPRQWVELLRLLAARPGGAPssSLRLTIVSD----HACFLSCATGLLTAEATRLHVPLALNPVrsHI 265
                        *****************************************8888779********....8999999999*****************98778 PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrll.............desvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerfle 259
                        +++++  + +L v++g a+++++ lqlhrl              +++ ++  + d++L+++++lsPk++v++eqeadhn++    + +r+ +
  GRMZM5G889326_P01 266 DNFSAAVIAALGVQRGQAVVISSTLQLHRLIadttivshrhagrQHDETM-TRADALLHVLRDLSPKLLVLTEQEADHNDGegrGLWDRVDS 356
                        89999999***********************9******999995333333.3489***********************9886668******* PP

               GRAS 260 aleyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg. 348
                        a++yy++lf+ l  + +pres +r++vEr ll++eiv+++a  ga+rrerhe+l +W  r+ +aGF+p+ ++ +  k+  +l  + + +dg 
  GRMZM5G889326_P01 357 AFDYYAVLFNDLeVSRVPRESLDRAVVERLLLREEIVDIIARDGAARRERHEKLLRWVPRMLAAGFQPALVGMDGFKETTRLADRLSdGDGq 448
                        ************5567**********************************************************************999999 PP

               GRAS 349 ...yrve..eesgslv..lgWkdrpLvsvSaWr 374
                           yrv   +e+g+++   +W   p++svS W+
  GRMZM5G889326_P01 449 rplYRVVkvKEKGCFFvhSCW--TPMFSVSLWQ 479
                        999998867789998845677..69*******5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.5156452IPR005202Transcription factor GRAS
PfamPF035141.2E-7286479IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MSSGNLYNSS NKGKAVLNLD LCAPMPVEAV PLMAVGSGEP AVRSSAEAMP AAATMAAAAA  60
AAVIRPGGSQ SQQLDKSLIL LVKCVMQHCV RAMEAGNTEA SNNALAALSS VSSLDGDPIQ  120
RLTSAFTEAL ARRALEPLLQ GLPWAIKEQL RRPPPPAYAD VARQWFHTLS PLLRAAGLAA  180
NHAIVKALEG EQDVHVVDLG GANPRQWVEL LRLLAARPGG APSSSLRLTI VSDHACFLSC  240
ATGLLTAEAT RLHVPLALNP VRSHIDNFSA AVIAALGVQR GQAVVISSTL QLHRLIADTT  300
IVSHRHAGRQ HDETMTRADA LLHVLRDLSP KLLVLTEQEA DHNDGEGRGL WDRVDSAFDY  360
YAVLFNDLEV SRVPRESLDR AVVERLLLRE EIVDIIARDG AARRERHEKL LRWVPRMLAA  420
GFQPALVGMD GFKETTRLAD RLSDGDGQRP LYRVVKVKEK GCFFVHSCWT PMFSVSLWQP  480
APGDHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-278847125380Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G889326
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G889326_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270040.0KJ727004.1 Zea mays clone pUT3980 GRAS transcription factor (GRAS77) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020395710.20.0scarecrow-like protein 3
TrEMBLK7UJ490.0K7UJ49_MAIZE; GRAS transcription factor (Fragment)
STRINGGRMZM5G889326_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137161330
Representative plantOGRP1996722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-46scarecrow-like 3