PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G887286_P01
Common NameZm.125586
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 300aa    MW: 34212.3 Da    PI: 8.0404
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G887286_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045103125223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C+ C+++++++ +L  H +  H
  GRMZM5G887286_P01 103 SCSVCSRVYPTSRLLSIHVSEtH 125
                        6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003558.675100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028077100IPR007087Zinc finger, C2H2
SMARTSM003552.1102125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104125IPR007087Zinc finger, C2H2
SMARTSM003550.13140165IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280142165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MQKKPDDAME EEAAAAPGPE IGFWLAARRR LAPEDPFFAA GDLERELLAK HLALDLSEDD  60
RNQLEKMEVA STCTVFCPIA GCGAHLDCLE EFEDHYVTRH TASCSVCSRV YPTSRLLSIH  120
VSETHDSYFQ AKVARGFPMY ECLVEGCGMK LKSYKSRQQH LIDKHQFPKS FEFFKKARDS  180
QRQRQKSQRR QTAHKGEETR DNSMDVDGKG ARQTNRRYRL KQHDHSEPKE NKQQHKEAQE  240
DEMEVEQKID ELTSAVSRLS TADSTPSSVT FGHRRSRGLT FVPRSIRQNK QAALPAGSNK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.195350.0cell lignification| endosperm| meristem| pollen| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G887286
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G887286_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9594940.0EU959494.1 Zea mays clone 218341 zinc finger protein 511 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148645.20.0zinc finger protein 511
TrEMBLB6T3C90.0B6T3C9_MAIZE; Zinc finger protein 511
STRINGGRMZM5G887286_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Representative plantOGRP75381313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.19e-93zinc ion binding;nucleic acid binding;zinc ion binding
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]