PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G887276_P03
Common NameLOC100275291
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 434aa    MW: 46203.2 Da    PI: 8.403
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G887276_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.88.9e-322780255
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR 
  GRMZM5G887276_P03 27 PRLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQMYRN 80
                       8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6532383IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-312383IPR009057Homeodomain-like
SuperFamilySSF466898.24E-162582IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-242780IPR006447Myb domain, plants
PfamPF002498.9E-102879IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MTMVRTTMVG ARERSGGVRQ YNRSKVPRLR WTPDLHHCFV HAIHKLGGQD KATPKRVLQL  60
MGVGGLTISH VKSHLQMYRN MRNDLGMQGT TMQLVHRAEE HVYGLGGMHM ELCADTQRRQ  120
PQCGHDECDG PACCCIVVCR SPPPPKPGKE ATTLFQRQLK SVFAMEEPNN SGAGRRRERE  180
EMDGSASPKR VLLRGGPGPG TCEGDGSPSP PSASGGLCWA LATAAAGGYN SYMRMMQAAM  240
GMAAGARAPP PRTLRHPPRH AETTVEPSRG PGIKRQAQMQ SASARPGAQG GEHAAPALRP  300
RSTSSSEQLI TFSGFVVAQK QPPPPPPPCC SRDHPFEMVG TALIAHGASA EARCGLETPP  360
RLPAVAEQAG GDPCWTSSAG SEDDHDEEED GCSLSLSLAT RSSRSSGDEG GRLSPTAATS  420
WGSQISLDLS LSTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-172882357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-172882357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-172882357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-172882357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.366550.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G887276
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G887276_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0689100.0BT068910.1 Zea mays full-length cDNA clone ZM_BFc0191L18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142882.10.0uncharacterized LOC100275291
TrEMBLC0PKU10.0C0PKU1_MAIZE; Putative Myb family transcription factor
STRINGGRMZM5G887276_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76102950
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.12e-27G2-like family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]