PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G885700_P02 | ||||||||
Common Name | C2H133, LOC100193305 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 354aa MW: 40203 Da PI: 7.7729 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00041 | 64 | 86 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H +H GRMZM5G885700_P02 64 CSyeGCGKTFFDAGALRKHAHVH 86 77779**************9887 PP | |||||||
2 | zf-C2H2 | 15.1 | 6.6e-05 | 91 | 115 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ +Cgk F ++s LkrH H GRMZM5G885700_P02 91 YICHyeNCGKKFLDSSKLKRHFLIH 115 89*******************8877 PP | |||||||
3 | zf-C2H2 | 21.8 | 4.9e-07 | 121 | 145 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nLk H++tH GRMZM5G885700_P02 121 FVCPheGCGKAFSLDFNLKAHMKTH 145 89**********************9 PP | |||||||
4 | zf-C2H2 | 19.2 | 3.4e-06 | 151 | 176 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ Cg++F++ s L+ Hir H GRMZM5G885700_P02 151 HVCQypECGRRFTQESKLRAHIRAqH 176 689999*****************888 PP | |||||||
5 | zf-C2H2 | 15.5 | 4.9e-05 | 220 | 245 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C+k + + + L+ H+++ H GRMZM5G885700_P02 220 YVCPydGCDKAYIHEYKLNLHLKKeH 245 9**********************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.6E-13 | 58 | 88 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0032 | 62 | 86 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.762 | 62 | 91 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.03E-6 | 63 | 87 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 64 | 86 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.4E-14 | 89 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 14.066 | 91 | 120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.013 | 91 | 115 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 93 | 115 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.87E-14 | 102 | 154 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.2E-20 | 112 | 148 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.321 | 121 | 150 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.3E-4 | 121 | 145 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 123 | 145 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.8E-8 | 150 | 173 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0047 | 151 | 176 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.24 | 151 | 176 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.18E-7 | 153 | 176 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 153 | 176 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.2E-9 | 212 | 242 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.18E-7 | 215 | 242 | No hit | No description |
SMART | SM00355 | 0.0024 | 220 | 245 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.891 | 220 | 250 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 222 | 245 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MQIPHRRYRW VKEWVSQELV VAGGPCVLYK WVREDRLAAL KAKDKKHGAE SATPEPNSEV 60 LFLCSYEGCG KTFFDAGALR KHAHVHGERQ YICHYENCGK KFLDSSKLKR HFLIHTGEKN 120 FVCPHEGCGK AFSLDFNLKA HMKTHSADNY HVCQYPECGR RFTQESKLRA HIRAQHEKAV 180 CLQNPGASAM NHSAIGEQHQ PPKPAKVSAT PPAPSAERPY VCPYDGCDKA YIHEYKLNLH 240 LKKEHPNHYQ DGGPQGAAPS KRSISKSSHR SRPDITARMP PAKVSKRKGG YAAPSPAVNL 300 PEEHLPEEQQ WPRKVMYEDD SEETEEEEGG NNVEDRWNYN RVASSDDEET EDEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 4e-34 | 64 | 179 | 8 | 120 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G885700 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G885700_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035535 | 0.0 | BT035535.1 Zea mays full-length cDNA clone ZM_BFb0068J12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131916.1 | 0.0 | transcription repressor TRM protein | ||||
Swissprot | Q2V3L3 | 1e-101 | YY1_ARATH; Zinc finger transcription factor YY1 | ||||
TrEMBL | B4FEJ7 | 0.0 | B4FEJ7_MAIZE; C2H2 transcription factor | ||||
STRING | GRMZM5G885700_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2094 | 38 | 99 | Representative plant | OGRP3856 | 16 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.1 | 1e-97 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G885700_P02 |
Entrez Gene | 100193305 |
Publications ? help Back to Top | |||
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