PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G884137_P02
Common NameLOC100304401, ZEAMMB73_964587, Zm.32364
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 599aa    MW: 62389.5 Da    PI: 8.896
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G884137_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-0585107123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C+k F r  nL+ H r H
  GRMZM5G884137_P02  85 FVCEVCSKGFQREQNLQLHRRGH 107
                        89*******************88 PP
2zf-C2H211.60.00088162184123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H + +
  GRMZM5G884137_P02 162 WKCDKCSKRYAVQSDWKAHSKIC 184
                        58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.08E-884107No hitNo description
Gene3DG3DSA:3.30.160.603.0E-584107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.008685107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.03285107IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM00355140127157IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4150183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.08E-8157182No hitNo description
SMARTSM00355140162182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MMASNSPAAA FFGVRDGDQQ DHQIKPLISP QQQQQLAAAL PSVASGQGAP TAAAQPPPKK  60
KRTMPDPDAE VIALSPKTLM ATNRFVCEVC SKGFQREQNL QLHRRGHNLP WKLKQKDPLQ  120
AQRRRVYLCP EPTCAHHDPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVQSDWKAH  180
SKICGTREYR CDCGTLFSRR DSFITHRAFC DALAQESARL PPTSSLSNLT SHLYGAATNA  240
GNMALSLSQV GSHLTSTLQD GHHHRPSPEL LRLGATAGGG GGSSIAARLD HLLSPNGASA  300
FRPAQPPSFF HNAGASVGQD FGDDAGNGPH SFLQLQANKP FHGLLMQLPD LQGNGAGGPG  360
ASGGPSSLFS LGFFANNGNS SSGSSHEHAS QGLMNSDQFS GGGSEAQAAA GIFGGNFVSA  420
GGDQVPPPGL YRDQASMLPQ MSATALLQKA AQMGATTSAN GASAASMFRG FAGSSPQHVR  480
PATPHMEQSD ANLNDLMNSL AGGGGLGAGG GMFGGGSNGA GHAGMFDPRQ LCDMAEREGK  540
FGFGQGGGGD ITRDFLGVGG GGLVRGISTP RGDHQSSSDM SSMEAELKSA SSFNGGRMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35158228370Zinc finger protein JACKDAW
5b3h_F1e-35158228370Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.323640.0aerial organ| endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G884137
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G884137_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0610500.0BT061050.1 Zea mays full-length cDNA clone ZM_BFb0091K24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001159309.10.0naked endosperm2
RefseqXP_008662091.10.0naked endosperm2 isoform X1
RefseqXP_008662092.10.0naked endosperm2 isoform X1
RefseqXP_008662093.10.0naked endosperm2 isoform X1
RefseqXP_008662094.10.0naked endosperm2 isoform X1
TrEMBLC0HFE40.0C0HFE4_MAIZE; Naked endosperm2
STRINGGRMZM5G884137_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.27e-99C2H2-like zinc finger protein