PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G884137_P01 | ||||||||
Common Name | LOC100304401, ZEAMMB73_964587, Zm.32364 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 599aa MW: 62389.5 Da PI: 8.896 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.2e-05 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H GRMZM5G884137_P01 85 FVCEVCSKGFQREQNLQLHRRGH 107 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00088 | 162 | 184 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + GRMZM5G884137_P01 162 WKCDKCSKRYAVQSDWKAHSKIC 184 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.08E-8 | 84 | 107 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.0E-5 | 84 | 107 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0086 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.032 | 85 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 140 | 127 | 157 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 150 | 183 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.08E-8 | 157 | 182 | No hit | No description |
SMART | SM00355 | 140 | 162 | 182 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 599 aa Download sequence Send to blast |
MMASNSPAAA FFGVRDGDQQ DHQIKPLISP QQQQQLAAAL PSVASGQGAP TAAAQPPPKK 60 KRTMPDPDAE VIALSPKTLM ATNRFVCEVC SKGFQREQNL QLHRRGHNLP WKLKQKDPLQ 120 AQRRRVYLCP EPTCAHHDPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVQSDWKAH 180 SKICGTREYR CDCGTLFSRR DSFITHRAFC DALAQESARL PPTSSLSNLT SHLYGAATNA 240 GNMALSLSQV GSHLTSTLQD GHHHRPSPEL LRLGATAGGG GGSSIAARLD HLLSPNGASA 300 FRPAQPPSFF HNAGASVGQD FGDDAGNGPH SFLQLQANKP FHGLLMQLPD LQGNGAGGPG 360 ASGGPSSLFS LGFFANNGNS SSGSSHEHAS QGLMNSDQFS GGGSEAQAAA GIFGGNFVSA 420 GGDQVPPPGL YRDQASMLPQ MSATALLQKA AQMGATTSAN GASAASMFRG FAGSSPQHVR 480 PATPHMEQSD ANLNDLMNSL AGGGGLGAGG GMFGGGSNGA GHAGMFDPRQ LCDMAEREGK 540 FGFGQGGGGD ITRDFLGVGG GGLVRGISTP RGDHQSSSDM SSMEAELKSA SSFNGGRMP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-35 | 158 | 228 | 3 | 70 | Zinc finger protein JACKDAW |
5b3h_F | 1e-35 | 158 | 228 | 3 | 70 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.32364 | 0.0 | aerial organ| endosperm| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G884137 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G884137_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061050 | 0.0 | BT061050.1 Zea mays full-length cDNA clone ZM_BFb0091K24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001159309.1 | 0.0 | naked endosperm2 | ||||
Refseq | XP_008662091.1 | 0.0 | naked endosperm2 isoform X1 | ||||
Refseq | XP_008662092.1 | 0.0 | naked endosperm2 isoform X1 | ||||
Refseq | XP_008662093.1 | 0.0 | naked endosperm2 isoform X1 | ||||
Refseq | XP_008662094.1 | 0.0 | naked endosperm2 isoform X1 | ||||
TrEMBL | C0HFE4 | 0.0 | C0HFE4_MAIZE; Naked endosperm2 | ||||
STRING | GRMZM5G884137_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1733 | 37 | 98 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14580.2 | 7e-99 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G884137_P01 |
Entrez Gene | 100304401 |