PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM5G883760_P01 | ||||||||
Common Name | LOC103636710, Zm.147617 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 178aa MW: 18650.9 Da PI: 8.7875 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.8e-05 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F ++ L H +H GRMZM5G883760_P01 45 FRCSVCGKAFASHQALGGHKASH 67 89*************99998887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.5E-11 | 44 | 69 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.013 | 45 | 67 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.28E-7 | 45 | 119 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-4 | 45 | 68 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.783 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.6E-11 | 96 | 120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.65 | 97 | 119 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.411 | 97 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 99 | 119 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 178 aa Download sequence Send to blast |
MATTHDDCVS LCLMALAAAG GGGMTTQSYA PSTAAWTTQE CELRFRCSVC GKAFASHQAL 60 GGHKASHRKP THLQTQQASS SSVTTSSAGS GGGQGRHRCS VCHRSFATGQ ALGGHKRCHY 120 WDGLSVSLTA SGSGSTVKGF DLNLMPATRW GEEEEVQSPL PIKKRRLSGP SLDLSLTI |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.9556 | 1e-96 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM5G883760 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM5G883760_P01 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ245451 | 3e-94 | DQ245451.1 Zea mays clone 15722 mRNA sequence. | |||
GenBank | EU968731 | 3e-94 | EU968731.1 Zea mays clone 323782 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008657279.1 | 1e-127 | zinc finger protein 36 | ||||
Swissprot | Q75KE5 | 1e-44 | ZFP36_ORYSJ; Zinc finger protein 36 | ||||
TrEMBL | A0A1D6K643 | 1e-126 | A0A1D6K643_MAIZE; Zinc finger protein AZF2 | ||||
STRING | GRMZM5G883760_P01 | 1e-127 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3412 | 32 | 73 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43170.1 | 7e-28 | zinc-finger protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM5G883760_P01 |
Entrez Gene | 103636710 |
Publications ? help Back to Top | |||
---|---|---|---|
|