PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G879527_P01 | ||||||||
Common Name | LOC100279237 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 347aa MW: 36236.3 Da PI: 6.9138 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.9 | 5.6e-06 | 309 | 332 | 6 | 29 |
HHHHHHHHHHHHHHHHHHHCTSCC CS HLH 6 nerErrRRdriNsafeeLrellPk 29 +++Er RR +i +++ +L+el+P GRMZM5G879527_P01 309 SIAERVRRTKISERIRKLQELVPD 332 689********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.007 | 303 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-5 | 306 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 0.00125 | 307 | 337 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.7E-5 | 308 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MYGSPVSKDL NLPAQPPPMA SSGLLRYRSA PSAVLGGLCE DQLQLPAAAP SAADNVFSRF 60 LPDHHIRDDK PSPAHFPSAA DMASHHQQEQ MMFHSQSQSQ HQQETGRSGG GLYRTVSSGM 120 EAGGTGVGAA SSLIRQSSSP AGFLDHFGMD NGYGAMLRAS MGMGFQDGGA SDSLAGGGGG 180 SGRLGGQLSF SSRQGSLMSQ ISEMDSQEDV VGASSPDAGG GGDAAYMPGY PMSSGGWDDS 240 SSALLPDSLP ATNKRPRDSL EHGGGLAHQF SLPKTSSSEV AAIEKFLQFQ DAVPCKVRAK 300 RGCATHPRSI AERVRRTKIS ERIRKLQELV PDMDKVTAPA PTGFSAR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.123485 | 0.0 | cell culture| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G879527 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G879527_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064578 | 0.0 | BT064578.1 Zea mays full-length cDNA clone ZM_BFc0184N05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001316636.1 | 0.0 | uncharacterized protein LOC100279237 | ||||
Refseq | XP_008672511.1 | 0.0 | uncharacterized protein LOC100279237 isoform X1 | ||||
Refseq | XP_023157682.1 | 0.0 | uncharacterized protein LOC100279237 isoform X1 | ||||
TrEMBL | C0P8F9 | 0.0 | C0P8F9_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM5G879527_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 3e-32 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G879527_P01 |