PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G878561_P01
Common NameZm.31210
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 447aa    MW: 46723.3 Da    PI: 9.1534
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G878561_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP69.56.6e-2284130248
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                        C v+gC+adls++++yhrrhkvCe+hsk+pvv+v+g++qrfCqqCs 
  GRMZM5G878561_P01  84 CSVQGCDADLSRCRDYHRRHKVCEAHSKTPVVTVAGQQQRFCQQCSS 130
                        *********************************************96 PP
2SBP47.54.9e-151681984878
                        SEEETTT--SS--S-STTTT-------S--- CS
                SBP  48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        rfh l efDe krsCr+rL++hn+rrrk+q+
  GRMZM5G878561_P01 168 RFHLLGEFDEVKRSCRKRLDGHNRRRRKPQP 198
                        9***************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-2778129IPR004333Transcription factor, SBP-box
PROSITE profilePS5114123.7681196IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.94E-2182132IPR004333Transcription factor, SBP-box
PfamPF031103.8E-1784133IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.89E-12167200IPR004333Transcription factor, SBP-box
PfamPF031106.9E-7168195IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.102.4E-27168183IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0020040anatomyleaf base
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDWDAKMLPA WDLGTVVGPS SSGGGALDLK LGAPTSSRAV LTAAAGAAPA LPSANPPPPP  60
PPPSSSAPAK RPRPGLARQA VPACSVQGCD ADLSRCRDYH RRHKVCEAHS KTPVVTVAGQ  120
QQRFCQQCSS VKPSASSRCM RCAPVLSGAC PYNATRQVQW NWTSVQFRFH LLGEFDEVKR  180
SCRKRLDGHN RRRRKPQPDP LNPAGLFGNH HGVTRFTSYP QLFAASMEQP KWSVVKTEAD  240
VFQDQYYPAV HLNGAGGGAI GSHFHGKEQK HFPFLTSHSN GGGGGDVATA AALGCQPFTI  300
TTTASSESDS KQSNGNCALS LLSDNPTSAQ TAMIPTTAQS LAAAMQYGGR LPGSVSVSGG  360
GGGDVSLTGM SYMRVGDSRQ ASILTASSPG HAAVASPVPA TTAAATPPPP PQLLQYHHGY  420
GYYHVSGGEQ GNNPDGAAVH ALPFSSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A6e-1684129651squamosa promoter-binding protein-like 12
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16973KRPRP
2178195KRSCRKRLDGHNRRRRKP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G878561
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G878561_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3560773e-59AK356077.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1029L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674641.10.0squamosa promoter-binding-like protein 2
SwissprotQ0JGI11e-105SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLA0A1D6N2V60.0A0A1D6N2V6_MAIZE; Squamosa promoter-binding-like protein 6
STRINGGRMZM5G878561_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104563038
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-37SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]