PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM5G874163_P01 | ||||||||
Common Name | LOC100502387, ZEAMMB73_374158 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 340aa MW: 37384.6 Da PI: 7.9508 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 79.9 | 2.6e-25 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae++ ++ + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F GRMZM5G874163_P01 128 FCKTLTASDTSTHGGFSVPRRAAEDCfppldynQLRP--SQELVAKDLHGAKWKFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL-- 215 99****************************9876665..459************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + +++el+++v+r+ GRMZM5G874163_P01 216 RGDDGELRLGVRRA 229 3489999***9996 PP | |||||||
2 | Auxin_resp | 94.5 | 1.7e-31 | 254 | 334 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a++++++svF++ YnPra++se++++++k++k+l+++v++G R+ ++ +ed+serr sG+vv +s++dp++Wp+SkWrsL GRMZM5G874163_P01 254 VADSLKNRSVFHISYNPRATASEYIIPYAKFLKSLNHPVCIGARINFQCHNEDVSERR-SGVVVRISEIDPMKWPGSKWRSL 334 57889*****************************************************.9********************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.59E-45 | 114 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-39 | 126 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.48E-23 | 126 | 228 | No hit | No description |
Pfam | PF02362 | 3.2E-23 | 128 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.422 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-24 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-26 | 255 | 334 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MGIDLNMVDG EGHERRPPPV TCRELWHACA GPVVALPRRG SLVVYLPQGH LAAAGGGDVA 60 ADLPPHVVCR VADVELCADA ATDEVCARLA LVAEGEAFGR NLGGGGVEGD DGMEDFDAER 120 KSGMLHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYN QLRPSQELVA KDLHGAKWKF 180 RHIYRGQPRR HLLTTGWSSF VNKKKLVSGD AVLFLRGDDG ELRLGVRRAI QLKNEALFED 240 FNSDSTKRHS LTAVADSLKN RSVFHISYNP RATASEYIIP YAKFLKSLNH PVCIGARINF 300 QCHNEDVSER RSGVVVRISE IDPMKWPGSK WRSLLMGGRC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-89 | 19 | 334 | 49 | 366 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.80746 | 0.0 | ear| embryo| tassel |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM5G874163 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM5G874163_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT087971 | 0.0 | BT087971.1 Zea mays full-length cDNA clone ZM_BFb0336E09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008655396.1 | 0.0 | auxin response factor 3 isoform X1 | ||||
Swissprot | Q5JMM1 | 1e-179 | ARFC_ORYSJ; Auxin response factor 3 | ||||
TrEMBL | C4JAX4 | 0.0 | C4JAX4_MAIZE; Auxin response factor | ||||
STRING | GRMZM5G874163_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-132 | ARF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM5G874163_P01 |
Entrez Gene | 100502387 |
Publications ? help Back to Top | |||
---|---|---|---|
|