PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G870592_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 526aa    MW: 57531.8 Da    PI: 6.1183
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G870592_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.2e-18238284148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g WT+eEd +lv++v+q+G + W+ Ia+ ++  R +kqc++rw+++l
  GRMZM5G870592_P01 238 KGQWTPEEDRKLVKLVEQFGLRKWSYIAQLLP-ARVGKQCRERWHNHL 284
                        799*****************************.*************97 PP
2Myb_DNA-binding521.6e-16292332345
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         W+ eEd  l++a+k+ G++ W+ Ia++++ gRt++++k++w+
  GRMZM5G870592_P01 292 IWSDEEDMVLIEAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 332
                        6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.685233288IPR017930Myb domain
SuperFamilySSF466899.35E-31235331IPR009057Homeodomain-like
SMARTSM007172.7E-13237286IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-29239291IPR009057Homeodomain-like
CDDcd001672.74E-14241284No hitNo description
PfamPF139215.9E-18241298No hitNo description
SMARTSM007173.0E-16289337IPR001005SANT/Myb domain
PROSITE profilePS5129419.57289339IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-21292337IPR009057Homeodomain-like
CDDcd001672.19E-13293335No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MVAASRRRRP QSGHVRHAAR PDRLSITTPS APLSPPAPGA AAAAAVGASQ ASTALSMPPA  60
GETEHETTTG VRGSLPGSLT ALSGLTRVAL DRVARSFDIL GRDREPATSA EEVENGSGRP  120
EISSLEYGSA RITLHDGQYE LHLHPADHHP LEVTGDYTSA TFDDLGHEFF AEREIEKPIF  180
NRTSSIGRRV GSQLPLPTIK TEVSHLIDSG LVSCKAYEIN DRFLARKKTS LKKANVVKGQ  240
WTPEEDRKLV KLVEQFGLRK WSYIAQLLPA RVGKQCRERW HNHLRPNIKK DIWSDEEDMV  300
LIEAHKEVGN KWAEIAKRLP GRTENSIKNH WNATKRRQFA RRRSRTSSKA PKPGTLLQSY  360
IEGLGIVGPS DKSAAPLSEP TLSPEAPGAK SAKTGGTTLP EEHSPPSNML DSQGVLLPSE  420
ELLAPICDEL LDGMCGGLFD CTNEDAFFRV CAVDDDIDVS YIFDHAIKVD PEIDMEMMMM  480
WDDDALACTA GPAAGTAHVE TVHVKEEMDL MEMVAATQNC GEAENH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-442363382104C-Myb DNA-Binding Domain
1msf_C3e-442363382104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G870592
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G870592_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9689450.0EU968945.1 Zea mays clone 325135 protein binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001337122.10.0Transcription factor MYB98
TrEMBLA0A1D6L7W70.0A0A1D6L7W7_MAIZE; Transcription factor MYB98
STRINGGRMZM5G870592_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-59myb domain protein 98