PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G868061_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | BES1 | ||||||||
Protein Properties | Length: 171aa MW: 18755.7 Da PI: 9.9655 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 128.2 | 1e-39 | 42 | 153 | 2 | 114 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspess 93 +s r+pt +ErEnn++RERrRR++aa+iyaGLRa ++y+lpk+aD+n+Vl+ALc+eAG+ v+d+G++ r++ + a+ +s++ ++ ss GRMZM5G868061_P01 42 TSLRHPTPRERENNRQRERRRRQVAARIYAGLRARAGYALPKHADQNDVLRALCAEAGYHVDDEGNVTRHQGV-GDGAAGPSCSSDHQKPSS 132 789****************************************************************993332.246888888888999999 PP DUF822 94 lqsslkssalaspvesysasp 114 ++ ++++ +l+ e++++ + GRMZM5G868061_P01 133 ISGTVEAATLQQEQEQQHQGQ 153 998888888887777777654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.3E-29 | 44 | 134 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MERQAGAGRE EGVAAAPRKG CIRSTQGPWT VRRRGRGGGL TTSLRHPTPR ERENNRQRER 60 RRRQVAARIY AGLRARAGYA LPKHADQNDV LRALCAEAGY HVDDEGNVTR HQGVGDGAAG 120 PSCSSDHQKP SSISGTVEAA TLQQEQEQQH QGQREEGVNM SLELTLSFAY M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 3e-11 | 65 | 110 | 392 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 3e-11 | 65 | 110 | 392 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 3e-11 | 65 | 110 | 392 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 3e-11 | 65 | 110 | 392 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G868061 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G868061_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU947756 | 1e-180 | EU947756.1 Zea mays clone 356679 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001357917.1 | 1e-122 | uncharacterized LOC103649675 | ||||
TrEMBL | A0A1D6MJX2 | 1e-121 | A0A1D6MJX2_MAIZE; BES1/BZR family protein BES1/BZR6 | ||||
STRING | GRMZM5G868061_P01 | 1e-122 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13201 | 30 | 32 | Representative plant | OGRP10084 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.3 | 6e-15 | BES1 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G868061_P01 |