PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G866699_P02
Common NameZEAMMB73_182225, Zm.128121
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YB
Protein Properties Length: 830aa    MW: 92076.2 Da    PI: 4.9196
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G866699_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB119.61.4e-3717111196
              NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                        vreqd flPi+ ++rimkk++Panaki+kdake++q cvsefi fvtsea +k+++e+rk in ddllw++ t Gfe yve l++ l+kyre
  GRMZM5G866699_P02  17 VREQDMFLPITSITRIMKKAVPANAKITKDAKEIMQYCVSEFIFFVTSEAREKSKKEERKRINVDDLLWSVDTAGFE-YVELLRICLQKYRE 107
                        58**************************************************************************7.*************9 PP

              NF-YB  93 lege 96 
                         +++
  GRMZM5G866699_P02 108 GDSN 111
                        7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.0E-3715127IPR009072Histone-fold
SuperFamilySSF471134.19E-2720123IPR009072Histone-fold
PfamPF008082.9E-202287IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PfamPF062031.7E-18703745IPR010402CCT domain
PROSITE profilePS5101715.577703745IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MADDSGSHEG GGGDDDVREQ DMFLPITSIT RIMKKAVPAN AKITKDAKEI MQYCVSEFIF  60
FVTSEAREKS KKEERKRINV DDLLWSVDTA GFEYVELLRI CLQKYREGDS NKVSTKAGEG  120
SLNKDAVSTH GGTSNSSNQH GVYNQEMVPP QHGVNNKEMD DMSPQLVHHG VYNLEMDNML  180
SQLVQHGVYN QGICDMTPQL VQHGVYNQGM SDMPPKHGVY NQAMNDMPTQ LVQHGVYNQE  240
MDDMLPQLVQ HGVYNQGMSD MSPQLVQHGG YNQEMDDMTP QLVPHGVYNQ GMSDMLPQLV  300
QHGVHNQEMD DMPPQLVQHG VYNQEINDMQ PQLVQHGLYN GEMDDMPPQL VQHGVDNQEM  360
DDMPPHLVQH GVYNQEVDNM VPHLVQHGVY NQGMSDMLPQ LVPHGVYNQE MDNITPQHGV  420
YNQGMDDMPP QLVQHGVYNQ GMDDISPQLV QHGVCNQGMV DMQLQFVQHG VCNQGMDDIP  480
PQLRDVNLLE DTGVNNLGPA FLREYKSELA TWLIVPRLFP RPKAMFRRSS PSPSYSDALM  540
HNHAASFSAP LPVTVTVPVP AQNPRGAAAG GYLDGNVGAF SSPPSSYYNY NNIQRSVSSH  600
SLPMRLQPGD VSLGGRGFYS PSSPSAHQLT TTLPPLSSSP SSSSGELFEF TSPCPVRRVF  660
STGDLQGMNG SSPPRPVPSA DGCGHEGGGT FSQKVARYSA VERKERIERY RVKRHQRNFN  720
KKITYACRKT LADSRPRVKG RFARNGEVDA DADEREASDN SYEYGSSRDE LGNGSVYSTT  780
GSCYDGDNGE WWWRPPGAAA AAAGDDAQRQ RQVGFDDDDE LWATLDDLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-2818107393NF-YB
4awl_B1e-2818107494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-2818107494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G866699
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G866699_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9760090.0EU976009.1 Zea mays clone 508520 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6G8R80.0A0A1D6G8R8_MAIZE; Nuclear transcription factor Y subunit B-8
STRINGGRMZM5G866699_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.34e-32nuclear factor Y, subunit B8