PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G865967_P01
Common NameLOC100280260
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 397aa    MW: 42505.9 Da    PI: 7.8379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G865967_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH543e-17254301355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        + hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  GRMZM5G865967_P01 254 QVHNLSERRRRDRINEKMKALQELIPHC-----NKADKASMLDEAIEYLKSLQ 301
                        57*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.99E-19248305No hitNo description
Gene3DG3DSA:4.10.280.102.0E-20248306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-20249309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.216251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-14254301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-18257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MQTAIEHACS VVECAATARA AMDMSHYIPD WSSSMGDTFA PLGGEDDDGL IELMWRNGHV  60
VMQAQAPRKP PRPDDDEAAA AQAQAWFQYP VEERADLFSE LFGEAQAAVG GARGEAARQS  120
IRMMPPPPPP PRPAQAPREE KACPGDGGTA TATDGAGSSV LTVVSSLCGS NGNHVQATAP  180
GDVARARDVL MVTSSSTTRS RSCTTKSEQP GPGPGAARRS GKRKHNDATD AEDVGLECEP  240
AQRTTTAKRR RAAQVHNLSE RRRRDRINEK MKALQELIPH CNKADKASML DEAIEYLKSL  300
QLQLQVVWMG GGIAAAGVHQ RTMVAAPGRP PHVASLPASA PDLYTRYLAV DHLPPPPLVP  360
PPRTAAAMGL YPRQNPVPAT SSPSFRTTEN TRKLWQA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217223RRSGKRK
2248263RRRAAQVHNLSERRRR
3259264ERRRRD
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G865967
Function -- GeneRIF ? help Back to Top
  1. PIF4 are expressed in roots, stems, coleoptiles and leaves at the six-leaf stage. Transcript abundance increases overnight, peaks at dawn, and decreases during the day.Transcription is rapidly induced by far-red light and repressed by red light. PIF4 physically interacts with the REPRESSOR OF GA1-3 in vitro and in vivo. Over-expression in Arabidopsis results in constitutive shade avoidance.
    [PMID: 29403515]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G865967_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0558760.0BT055876.1 Zea mays full-length cDNA clone ZM_BFc0002C15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001348421.11e-163Phytochrome-Interacting Factor4
TrEMBLB8A2T40.0B8A2T4_MAIZE; Uncharacterized protein
STRINGGRMZM5G865967_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-27phytochrome interacting factor 3
Publications ? help Back to Top
  1. Shi Q, et al.
    Functional Characterization of the Maize Phytochrome-Interacting Factors PIF4 and PIF5.
    Front Plant Sci, 2017. 8: p. 2273
    [PMID:29403515]