PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G865626_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YA | ||||||||
Protein Properties | Length: 189aa MW: 20518.2 Da PI: 10.3232 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 42.2 | 2.7e-13 | 74 | 98 | 34 | 58 |
CBFB_NFYA 34 srkpylheSRhkhAlrRpRgsgGrF 58 s +pylheSRh+hA++R RgsgGrF GRMZM5G865626_P01 74 SSQPYLHESRHRHAMKRTRGSGGRF 98 579*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.7E-6 | 42 | 101 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 16.155 | 73 | 101 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.3E-12 | 74 | 98 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MADNLLYPQN KKGHILQPQI DSKEVYFEVA RSVLSYATKH SHIVLAFLIF TGCTVLLLQL 60 YSSPGKYASR SFLSSQPYLH ESRHRHAMKR TRGSGGRFLN TKQQLQEQNQ QHQASSGSMC 120 SKTIGNSIIS QSGPICTPSS DAAGASAASQ DRGCLPSVGF RPTANFSDQG GGGSKLVVNG 180 MQQRVSTIR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 91 | RHRHAMKRTR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.12773 | 1e-179 | endosperm| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G865626 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G865626_P01 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954616 | 1e-179 | EU954616.1 Zea mays clone 1474061 nuclear transcription factor Y subunit A-3 mRNA, complete cds. | |||
GenBank | KM655752 | 1e-179 | KM655752.1 Zea mays NF-YA14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008651393.1 | 8e-56 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
Refseq | XP_008651394.1 | 8e-56 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
TrEMBL | A0A3L6FQ21 | 3e-59 | A0A3L6FQ21_MAIZE; Nuclear transcription factor Y subunit A-3 | ||||
STRING | GRMZM5G865626_P01 | 1e-138 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 1e-11 | nuclear factor Y, subunit A5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G865626_P01 |