PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G863420_P01 | ||||||||
Common Name | LOC103630663, WRKY82, Zm.127256 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 221aa MW: 22963.4 Da PI: 7.2114 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.8 | 3.5e-31 | 134 | 192 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v++tYeg Hnh GRMZM5G863420_P01 134 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKDDPSYVVTTYEGMHNHV 192 59********************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-33 | 120 | 194 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-28 | 126 | 194 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.686 | 129 | 194 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-35 | 134 | 193 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-24 | 135 | 191 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MAAVGAHPVL YHHPAPAGDA SSMSSYFSHG GSSTTSSSAS SFTAALAPTT TALAEHFDIS 60 EFLFDDAAGA GVAGAPGVFA DGAARPVVLP VPDAAGGGAI IGAAAGGAAA ASEVPERPRT 120 TRIAFRTRSE IEILDDGYKW RKYGKKSVKN SPNPRNYYRC STEGCNVKKR VERDKDDPSY 180 VVTTYEGMHN HVSPSTVYYA SQDAASGRFF VAGTQPPGSL N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 125 | 195 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 125 | 195 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G863420 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G863420_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728363 | 0.0 | KJ728363.1 Zea mays clone pUT6645 WRKY transcription factor (WRKY82) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001338874.1 | 1e-160 | probable WRKY transcription factor 50 | ||||
TrEMBL | K7V714 | 1e-159 | K7V714_MAIZE; Putative WRKY DNA-binding domain superfamily protein (Fragment) | ||||
STRING | GRMZM5G863420_P01 | 1e-160 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 2e-41 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G863420_P01 |
Entrez Gene | 103630663 |