PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G863198_P01 | ||||||||
Common Name | LOC103628565 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 205aa MW: 21436.1 Da PI: 10.9184 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.6 | 9.1e-08 | 27 | 83 | 6 | 53 |
HHHHHHHHHHHHHHHHHHHCTSCC.C..........TTS-.STCHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as.......kapskK.lsKaeiLekAveYIks 53 + +Er+RR+++N +++L +l+ +s ++++ ++ + Le+A YI++ GRMZM5G863198_P01 27 KTVERNRRNQMNALYSRLDTLVRAgSSpssaaapVQRGPPaMTRPDRLEEAAAYIRQ 83 679*********************766******97777777**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.727 | 21 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.04E-7 | 23 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.5E-8 | 24 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.1E-5 | 27 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MEMPPPPPPP PFGGPAAAAG GSKLDRKTVE RNRRNQMNAL YSRLDTLVRA GSSPSSAAAP 60 VQRGPPAMTR PDRLEEAAAY IRQTTERVER LKERKRELVA SARASSSSQG SRSGSGSSSA 120 GAAEVEVQHL GSGLHAILVT TGAPPSEGAP FHRAVRAVEE AGGEVQNAHF SVVGARAIYT 180 IHALVAEGGI ERVVHRLKAA LRGDA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G863198 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G863198_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008646963.1 | 1e-142 | transcription factor bHLH162 | ||||
TrEMBL | A0A1D6H6F7 | 1e-141 | A0A1D6H6F7_MAIZE; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | ||||
STRING | GRMZM5G863198_P01 | 1e-142 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11987 | 29 | 38 | Representative plant | OGRP14459 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 5e-11 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G863198_P01 |
Entrez Gene | 103628565 |