PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G862109_P02 | ||||||||
Common Name | ids1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | AP2 | ||||||||
Protein Properties | Length: 325aa MW: 36175.2 Da PI: 6.572 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.1 | 1e-13 | 95 | 145 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+++++g GRMZM5G862109_P02 95 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDRAALRFNG 145 89********.7******...5...334336**********99***********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.087 | 1 | 60 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-11 | 22 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-9 | 25 | 61 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-11 | 25 | 61 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-9 | 95 | 145 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.30E-27 | 95 | 155 | No hit | No description |
SuperFamily | SSF54171 | 3.07E-17 | 95 | 154 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.2E-33 | 96 | 159 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-16 | 96 | 153 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.436 | 96 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-6 | 97 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-6 | 135 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MALDDFHFLL LLSLLLLLDL SRDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGLDADINFS 60 LSDYEDDLKQ MRNWTKEEFV HILRRQSTGF ARGSSKYRGV TLHKCGRWEA RMGQLLGKKY 120 IYLGLFDSEV EAARAYDRAA LRFNGREAVT NFEPSSYNAG DNNLRDTETE AIDDGDAIDL 180 DLRISQPNVQ DPKRDNTLAG LQPTCDSPES SNTMASQPMS SSSPWPGYHQ NPAVSFHHQR 240 LYSSACHGFF PNHQVQERPV ERRPELGAQP FPSWAWQAQG SPHVPLHHSA ASSGFSTAAG 300 ANGGMPLPSH PPAQFPTTTN PFFFP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.366 | 0.0 | embryo| meristem| pollen| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G862109 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in developing branch and spikelet meristems at very early stages of inflorescence formation, and is maintained uniformly in the spikelet meristems until floral organs initiation. Present in some floral organ primordia. {ECO:0000269|PubMed:22003982}. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in developing panicles and in young seedlings (PubMed:20017947, PubMed:22003982). Present at low levels at all developmental stages (PubMed:22003982). {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G862109_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF048900 | 0.0 | AF048900.1 Zea mays indeterminate spikelet 1 (ids1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001104904.2 | 0.0 | indeterminate spikelet 1 | ||||
Swissprot | Q84TB5 | 1e-132 | AP22_ORYSJ; APETALA2-like protein 2 | ||||
TrEMBL | A0A060D7J5 | 0.0 | A0A060D7J5_MAIZE; AP2-EREBP transcription factor (Fragment) | ||||
TrEMBL | O65008 | 0.0 | O65008_MAIZE; Indeterminate spikelet 1 (Fragment) | ||||
STRING | GRMZM5G862109_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 6e-73 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G862109_P02 |
Publications ? help Back to Top | |||
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