PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G857944_P02 | ||||||||
Common Name | CA2P13, LOC100282696, Zm.86073 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YA | ||||||||
Protein Properties | Length: 271aa MW: 29342.8 Da PI: 11.5199 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103 | 2.8e-32 | 102 | 158 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVN+KQy++Il+RRq Rakle+++kl ++rkpylheSRh hA++R+RgsgGrF GRMZM5G857944_P02 102 NEPIYVNPKQYHGILRRRQLRAKLEAQNKL-VRARKPYLHESRHLHAMKRARGSGGRF 158 59****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.5E-38 | 100 | 161 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.535 | 101 | 161 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.8E-28 | 103 | 158 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 9.8E-24 | 104 | 126 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 9.8E-24 | 135 | 158 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MLLPSSSSSS ASASKGNSFG KTVNDHLRST LSFDNKQPPF ASQNFDYGQT IACISYPYNR 60 SRSGDVWAAY ESRTSTATVF RSQIAGGGSS TRIPLPLELA ENEPIYVNPK QYHGILRRRQ 120 LRAKLEAQNK LVRARKPYLH ESRHLHAMKR ARGSGGRFLN TKQLQQSHTA LTRSTTTSGT 180 SSSGSTHLRL GGGAAAAGDR SVLAPKTMAS QDSSKKAVSS ALAFTATPML RRDDGFLQHP 240 SHLFSFSGHF GQASAQAGVH NGSQHRVPVM R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-21 | 102 | 169 | 2 | 69 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.86073 | 0.0 | endosperm| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G857944 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G857944_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728358 | 0.0 | KJ728358.1 Zea mays clone pUT6640 CCAAT-HAP2 transcription factor (CA2P13) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001354019.1 | 0.0 | nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | A0A060D8Z5 | 0.0 | A0A060D8Z5_MAIZE; CCAAT-HAP2 transcription factor (Fragment) | ||||
STRING | GRMZM5G857944_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13276 | 28 | 33 | Representative plant | OGRP14632 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17590.4 | 2e-39 | nuclear factor Y, subunit A8 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G857944_P02 |
Entrez Gene | 100282696 |
Publications ? help Back to Top | |||
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