PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G857701_P01
Common NameLOC103627878
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 296aa    MW: 32497.4 Da    PI: 7.1764
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G857701_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.21.9e-50101481128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        lppGfrF P+deelv++yL+ kv++++l  + + + evd++++ePw+Lp  +k +++ewyfFs rd+kyatg r+nratksgyWkatgkd+ 
  GRMZM5G857701_P01  10 LPPGFRFYPSDEELVCHYLHGKVANERLAGAGAaMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKATGKDRV 101
                        79*************************8776666***************87788999*********************************** PP

                NAM  92 vlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++           ++++vg++ktLvfy+grap+g+kt+Wvmhe+r+
  GRMZM5G857701_P01 102 IHTPcsrpaaggghHRAVVGMRKTLVFYRGRAPNGVKTSWVMHEFRM 148
                        **9988888877766666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-597167IPR003441NAC domain
PROSITE profilePS5100556.05610167IPR003441NAC domain
PfamPF023652.7E-2711148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHG KVANERLAGA GAAMVEVDLH THEPWELPDV  60
AKLSTNEWYF FSFRDRKYAT GLRTNRATKS GYWKATGKDR VIHTPCSRPA AGGGHHRAVV  120
GMRKTLVFYR GRAPNGVKTS WVMHEFRMEN PHTPPKEDWV LCRVFYKKKA DAMDYADCSD  180
QDAIAVHVPR GSADPGYCYS PPPFPALGGS HHHGGSLNDD FHGGMALLQQ QQHNGVFDFH  240
GGQPHPHGGG GGLLAGPPAT AVGSRDGGDQ CGSGVLMDLG LDDHYAYNSY NSLLQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-4811724169NO APICAL MERISTEM PROTEIN
1ut4_B4e-4811724169NO APICAL MERISTEM PROTEIN
1ut7_A4e-4811724169NO APICAL MERISTEM PROTEIN
1ut7_B4e-4811724169NO APICAL MERISTEM PROTEIN
4dul_A4e-4811724169NAC domain-containing protein 19
4dul_B4e-4811724169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.434970.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G857701
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G857701_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9649730.0EU964973.1 Zea mays clone 282884 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646406.10.0NAC domain-containing protein 92
SwissprotQ9FLJ25e-58NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1D6HNX00.0A0A1D6HNX0_MAIZE; NAC domain containing protein 74
STRINGGRMZM5G857701_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.17e-75NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]