PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G853836_P02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YA | ||||||||
Protein Properties | Length: 153aa MW: 16640.7 Da PI: 7.6436 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 45 | 3.6e-14 | 21 | 44 | 35 | 58 |
CBFB_NFYA 35 rkpylheSRhkhAlrRpRgsgGrF 58 +pylheSRh+hAlrRpRgsgGrF GRMZM5G853836_P02 21 MQPYLHESRHQHALRRPRGSGGRF 44 69*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.8E-4 | 1 | 47 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 17.802 | 1 | 47 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 7.2E-11 | 22 | 44 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MPCNISSVVF YRYIHVTAFM MQPYLHESRH QHALRRPRGS GGRFLNTKKE SSGKDAGGGS 60 KAMFSNPLMR QVASPSSEIQ QSDLGNPSSV SSLSGSEVSS MYDHEDAGHC HGLDHPFFTR 120 LPSIMDGGEH GVIVGNPFKW AAASEVCCDL LKA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.21683 | 0.0 | embryo| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G853836 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G853836_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033811 | 0.0 | BT033811.1 Zea mays full-length cDNA clone ZM_BFc0155E11 mRNA, complete cds. | |||
GenBank | BT067827 | 0.0 | BT067827.1 Zea mays full-length cDNA clone ZM_BFc0168D11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020404978.1 | 4e-91 | uncharacterized protein LOC100191652 isoform X1 | ||||
Refseq | XP_020404994.1 | 4e-91 | uncharacterized protein LOC100191652 isoform X1 | ||||
Refseq | XP_020405010.1 | 4e-91 | uncharacterized protein LOC100191652 isoform X1 | ||||
TrEMBL | B4F9M3 | 9e-90 | B4F9M3_MAIZE; Nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | B4FXN4 | 9e-90 | B4FXN4_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM5G853836_P02 | 1e-111 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2307 | 37 | 90 | Representative plant | OGRP5136 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17590.4 | 1e-10 | nuclear factor Y, subunit A8 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G853836_P02 |