PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G853392_P03
Common NameZm.118192
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 429aa    MW: 45886.1 Da    PI: 8.7522
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G853392_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.94.2e-2478121245
                WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+
  GRMZM5G853392_P03  78 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVED 121
                        69****************************************97 PP
2QLQ55.61.6e-19844137
                QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       ++FT+ Q+ +L++Q+l+yKyL+an PvP+ Ll++i++
  GRMZM5G853392_P03  8 GPFTPPQWIELEHQALIYKYLSANSPVPHSLLVPIRR 44
                       59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.3E-11844IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.5E-14943IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.273944IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.34377121IPR014977WRC domain
PfamPF088793.3E-2079120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006505anatomycentral spike of ear inflorescence
PO:0009009anatomyplant embryo
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001007developmental stagepollen development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MSSARVRGPF TPPQWIELEH QALIYKYLSA NSPVPHSLLV PIRRSGSLAS SPYPPPYFGT  60
STFGWGSFQL GYSGNADLEP GRCRRTDGKK WRCSRDAVAD QKYCERHMNR GRHRSRKHVE  120
DQPGHAAKAM SAVAVAAAAA AATQHAAALA GAGATAAAGL AVNRHRQPGK SYATGATDPC  180
SLQYSRELAN KLSNESENMQ DSDNVSMLTS MNTGNTAGSV FPFSKQNTAL FEVSSSRPEF  240
GLVPSDSLTS SPHSSLKSVK NLLSSRSLSE HQSSASLQHF VDWPRTPPAQ GGLSWPEAED  300
MPRAQRSQLS VSAPMASSEL SSASTSPIHD HEKLILSPLK LGREYTPSGV VSAAANRYEV  360
SQLEATWATM FRDSSTGGPL GEVLAKNNSN AEARGCPSAA PPLTDYYCWD SGHGMQSSPV  420
GVLQISVQL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1181920.0meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G853392
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G853392_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0857340.0BT085734.1 Zea mays full-length cDNA clone ZM_BFc0052P13 mRNA, complete cds.
GenBankJX4699860.0JX469986.1 Zea mays subsp. mays clone UT3346 GRF-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001337683.10.0uncharacterized protein LOC100191470
SwissprotQ6AWY30.0GRF6_ORYSJ; Growth-regulating factor 6
TrEMBLA0A1D6GI930.0A0A1D6GI93_MAIZE; Growth-regulating factor 2
TrEMBLC4J4I70.0C4J4I7_MAIZE; Uncharacterized protein
TrEMBLK4JFM00.0K4JFM0_MAIZE; GRF-type transcription factor (Fragment)
STRINGGRMZM5G853392_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42903568
Representative plantOGRP33571226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-47growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu H, et al.
    OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.
    Plant Physiol., 2014. 165(1): p. 160-74
    [PMID:24596329]
  3. Gao F, et al.
    Blocking miR396 increases rice yield by shaping inflorescence architecture.
    Nat Plants, 2015. 2: p. 15196
    [PMID:27250748]