PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G852704_P01
Common NameLOC103637851, ZEAMMB73_607417
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 349aa    MW: 37128.2 Da    PI: 6.7969
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G852704_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19173222255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f++ae+Aa a+++a+ +l+g
  GRMZM5G852704_P01 173 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAALAYDKAAFRLRG 222
                        59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.31E-31172230No hitNo description
Gene3DG3DSA:3.30.730.108.3E-32173231IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-22173230IPR016177DNA-binding domain
SMARTSM003803.8E-36173236IPR001471AP2/ERF domain
PROSITE profilePS5103223.09173230IPR001471AP2/ERF domain
PRINTSPR003672.3E-10174185IPR001471AP2/ERF domain
PfamPF008473.6E-13174222IPR001471AP2/ERF domain
PRINTSPR003672.3E-10196212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MATTDLYTGQ LSFSSSSSSD QELMKALEPF IRSASSPTSS TTSPFSYSSY SYPYSSVLPQ  60
DSYYLPATSS YTALPPPPLA PTATSFSQLP PLPQSSSSYA SPASSSCPTS SVDAASGLAL  120
NHLGPAQIHQ IHSQLLAQRR QQHQRGQLAA AFLGPQAQPM KHAGAPPLAA AKLYRGVRQR  180
HWGKWVAEIR LPRNRTRLWL GTFDSAEDAA LAYDKAAFRL RGDAARLNFP SLRRGGAHLA  240
GPLDASVDAK LTAICQGITA EPTSKAAAAA PSDSPKASAS TTTTEGDESV HSAGSPPSLP  300
TFPQQQQQVT PPLPEMASLD FTEAPWDESA ALHLNSYPSW DIDWDSILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-21169230163ATERF1
3gcc_A7e-21169230163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.210281e-105endosperm| meristem| ovary| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G852704
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G852704_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659105.10.0ethylene-responsive transcription factor RAP2-13
TrEMBLK7W5000.0K7W500_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM5G852704_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.12e-41ERF family protein