PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G850129_P03
Common NameZm.99923
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 324aa    MW: 34417.4 Da    PI: 8.5806
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G850129_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.61e-2386129144
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                        d+epgrCrRtDGKkWRCsr++ +++k+CE+H+hrg+srsrk++e
  GRMZM5G850129_P03  86 DTEPGRCRRTDGKKWRCSREAHGDSKYCEKHIHRGKSRSRKPVE 129
                        689**************************************998 PP
2QLQ59.78.7e-211246236
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                        FTa+Q+q+L++Q+l++Ky+a+++PvP++L+++++
  GRMZM5G850129_P03 12 LFTASQWQELEHQALIFKYMASGAPVPHDLVLPLR 46
                       5*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.5E-91147IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.8751247IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-151345IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.76786130IPR014977WRC domain
PfamPF088793.5E-1988129IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006505anatomycentral spike of ear inflorescence
PO:0009009anatomyplant embryo
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001007developmental stagepollen development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMLSGHGGGR RLFTASQWQE LEHQALIFKY MASGAPVPHD LVLPLRLATG VDTAPSLAFP  60
PQPSPSLAYW GCYGAGAPFG RKAAEDTEPG RCRRTDGKKW RCSREAHGDS KYCEKHIHRG  120
KSRSRKPVEV TSSPAAGPAA AYRPSAISTI SPPRAADAPP PSLAYPQQHL LHGASSAAGA  180
AARVPAGALQ LHLDASLHAA AAAASPSPPP SYHRYAHYTP PASSLFPGGG YGYDYDYGQS  240
KELRRRHFHA LGADLSLDKP LPEPDTGSDE KQPLRRFFDE WPRESGDMAA DDATQLSISI  300
PAASPSDLAA TSASAAAARF HNGE
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G850129
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G850129_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0349190.0BT034919.1 Zea mays full-length cDNA clone ZM_BFb0028B17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106042.20.0putative growth-regulating factor 7
SwissprotQ6AWY72e-86GRF2_ORYSJ; Growth-regulating factor 2
TrEMBLB4FCT10.0B4FCT1_MAIZE; Uncharacterized protein
STRINGGRMZM5G850129_P021e-165(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-40growth-regulating factor 5
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]