PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G850129_P02
Common NameZ576C20.6, Zm.99923
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 395aa    MW: 42765 Da    PI: 8.8082
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G850129_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.21.4e-23130173144
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                        d+epgrCrRtDGKkWRCsr++ +++k+CE+H+hrg+srsrk++e
  GRMZM5G850129_P02 130 DTEPGRCRRTDGKKWRCSREAHGDSKYCEKHIHRGKSRSRKPVE 173
                        689**************************************998 PP
2QLQ59.31.1e-201246236
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                        FTa+Q+q+L++Q+l++Ky+a+++PvP++L+++++
  GRMZM5G850129_P02 12 LFTASQWQELEHQALIFKYMASGAPVPHDLVLPLR 46
                       5*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.5E-91147IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.8751247IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.7E-151345IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.767130174IPR014977WRC domain
PfamPF088794.6E-19132173IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MMLSGHGGGR RLFTASQWQE LEHQALIFKY MASGAPVPHD LVLPLRLATG VDTAPSLAFP  60
PQPSPSRTTC ALLSSRPDLP RPRLMFHSDH RQPSAHHIIA DDFVRVTVHA VAYWGCYGAG  120
APFGRKAAED TEPGRCRRTD GKKWRCSREA HGDSKYCEKH IHRGKSRSRK PVEVTSSPAA  180
GPAAAYRPSA ISTISPPRAA DAPPPSLAYP QQHLLHGASS AAGAAARVPA GALQLHLDAS  240
LHAAAAAASP SPPPSYHRYA HYTPPASSLF PGGGYGYDYD YGQSKELRRR HFHALGADLS  300
LDKPLPEPDT GSDEKQPLRR FFDEWPRESG DMAADDATQL SISIPAASPS DLAATSASAA  360
AARFHNGEAA SQRLHFHWFL AYDRIADWCC RFIIV
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G850129
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G850129_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5309520.0AY530952.1 Zea mays unknown (Z576C20.2), putative heme oxygenase 1 (Z576C20.3), anthocyanin biosynthesis regulatory protein Pl1_B73 (Z576C20.4), putative growth-regulating factor 1 (Z576C20.6), and putative aminoalcoholphosphotransferase (Z576C20.14) genes, complete cds; and putative receptor protein kinase (Z576C20.21) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023155985.10.0putative growth-regulating factor 7 isoform X1
SwissprotQ6AWY76e-80GRF2_ORYSJ; Growth-regulating factor 2
TrEMBLQ6QP450.0Q6QP45_MAIZE; Putative growth-regulating factor 1
STRINGGRMZM5G850129_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139922527
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-34growth-regulating factor 5
Publications ? help Back to Top
  1. Swigonov
    Close split of sorghum and maize genome progenitors.
    Genome Res., 2004. 14(10A): p. 1916-23
    [PMID:15466289]
  2. Lai J, et al.
    Gene loss and movement in the maize genome.
    Genome Res., 2004. 14(10A): p. 1924-31
    [PMID:15466290]