PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G849600_P01
Common NamebHLH94, LOC100279537
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 426aa    MW: 44478.5 Da    PI: 5.4576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G849600_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.4e-13232277555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h + Er+RR+++N++f++Lr+llP++      K +K ++L+ A  Y+k L+
  GRMZM5G849600_P01 232 HMISERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLTNAASYLKALE 277
                        7789*********************9.....699**************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-17225293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.548227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-17232294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-10232277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-12232281No hitNo description
SMARTSM003531.5E-13233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MDEVWCGLDL QLQADGIHAG PDLHGHDHDP FWSALAECAA SFLASDADDT GGLVASAGDV  60
VHAKADGMDT SSFFADNDHH GLTQRRDEQQ QQQPVHSSSS LSSKRSLSID SGGSSSSTLI  120
PPLDGAAAAA FSPAPPQPQD PFAGDDEAIM LAMMAVISSA SPSSSESSSP PHRAAGAGAV  180
QPRVHLHGGD DSAGHVTVRT SSLAVAPTSA AARQQDDACM AAGSNNSSQV YHMISERKRR  240
EKLNDSFHTL RSLLPPCSKK DKTTVLTNAA SYLKALEAQV SELEEKNAKL ERHVPRDDGG  300
GGTAATAAAV AHRRARVHVA RAAPGEPQVS VTVMVMVECD IVDLVLRVLE CLRWMGGVVS  360
VLSVDADTYS PQAMLKALAN IKLHIVDGDC WNEALFHEAM TKAVHDATSP SSSPSCAAVA  420
PLVAAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235240ERKRRE
2236241RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1375770.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G849600
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G849600_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0544160.0BT054416.1 Zea mays full-length cDNA clone ZM_BFc0045O17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146007.10.0uncharacterized LOC100279537
TrEMBLB7ZYM40.0B7ZYM4_MAIZE; BHLH transcription factor
STRINGGRMZM5G849600_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Representative plantOGRP1200956
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-20bHLH family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]