PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G848942_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 475aa    MW: 52035.4 Da    PI: 9.0965
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G848942_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.31.2e-21275337163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+elkre+rkq+NRe+ArrsR+RK+ae+eeL++ v++L aeN++L++e+ +l++ ++kl+ e+
  GRMZM5G848942_P01 275 ERELKREKRKQSNRESARRSRLRKQAETEELATQVESLAAENTSLRSEIGRLTESSEKLRREN 337
                        89*********************************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.4E-17270335No hitNo description
PfamPF001704.3E-20275337IPR004827Basic-leucine zipper domain
SMARTSM003389.5E-22275339IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.346277340IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-10278334No hitNo description
CDDcd147021.12E-19280328No hitNo description
PROSITE patternPS000360282297IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MLSRHGEEDR DDAVRSLDQA LTSTHTPPPV LGCPRLTPSP PFLVTRRARR RSAAGRKEQA  60
SATSVRRVSV LLAASVRPSA SLLPASRTTP NRRARAHEPY LAPDVCSVLL AASVRPSASL  120
LPASRWITCI MPLGKPLGGL DRPQWACHTL LCSPWTLMLG QWIREGQALE TNSEACRHPM  180
GSFGLVATLH VATAMLWLDV EVGLLHSPMT LERAPNHTLG NATILPQHCF SAPVIKPSAT  240
NVANSRAIGT TLSPPPGVMV PVHNAVPSDL SVKDERELKR EKRKQSNRES ARRSRLRKQA  300
ETEELATQVE SLAAENTSLR SEIGRLTESS EKLRRENSAL MAISCQSAFP LTRGALSLIR  360
SQPKSKLMHY QRNCLRFQVS QVSAKGQVDA LSKELFALST VTDNRCTSYD TVYHESNGSS  420
GVYNLFIRVL SSYPTDVSES WTENADYIME ECELLGSWGP GECPHSRVVT AIALC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291297RRSRLRK
2291298RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.2630.0endosperm| meristem| ovary| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G848942
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G848942_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0336250.0BT033625.1 Zea mays full-length cDNA clone ZM_BFc0117G20 mRNA, complete cds.
GenBankBT0624120.0BT062412.1 Zea mays full-length cDNA clone ZM_BFb0293N02 mRNA, complete cds.
GenBankBT0627840.0BT062784.1 Zea mays full-length cDNA clone ZM_BFb0346H09 mRNA, complete cds.
GenBankJX4699570.0JX469957.1 Zea mays subsp. mays clone UT3219 bZIP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGRMZM5G848942_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.11e-17G-box binding factor 2