PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G848185_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 361aa    MW: 37942.2 Da    PI: 6.1214
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G848185_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.9e-151463146
                       TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqk 46
                       +g+W++eEd +l+ +++++G+g      + +I + ++ gRt++++k++w++
  GRMZM5G848185_P01 14 KGPWSPEEDAKLKAYIEEHGTGgnwiaLPQKIVAQLP-GRTDNDIKNYWNT 63
                       79*********************77777777777777.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-20569IPR009057Homeodomain-like
SuperFamilySSF466895.53E-13870IPR009057Homeodomain-like
PROSITE profilePS5129421.178969IPR017930Myb domain
SMARTSM007173.0E-121367IPR001005SANT/Myb domain
PfamPF002492.6E-131463IPR001005SANT/Myb domain
CDDcd001671.96E-121663No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDAKLKAYIE EHGTGGNWIA LPQKIVAQLP GRTDNDIKNY  60
WNTKLKKKLL GKRAPSRRAR ANQDPYLAAG GGNMCSTSGG NSAATATQTL SASALERIQL  120
HMRLQGMYGA FGCSGGGGND DRNAVVGAAA PQWPKLEALL QANRLLPGSL PTDAMATTVS  180
VQQRHHQHLV DHQSLAVGAG NAAAVEGEQQ QLSSADAANY MALPGGGFFE RPKLGFYSPS  240
AEAEATAAAA SVEMNSVAPM VGGGYGGAGF EQYHHHDVLY EFLYSNYGSV GELAQDGHVP  300
TLPELQCPNG AAVDGADEKF SVWTASAACD YGAAGGYQIQ LGNSIGSNLH DYVLGGYDQW  360
E
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G848185
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G848185_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040574e-58AP004057.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1316_E06.
GenBankAP0149584e-58AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126104e-58CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646370.10.0transcription factor MYB36
TrEMBLA0A3L6EKP80.0A0A3L6EKP8_MAIZE; Transcription factor MYB36
STRINGGRMZM5G848185_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Representative plantOGRP1206146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-38myb domain protein 36