PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G846057_P01
Common NameEREB34, LOC100272581
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 287aa    MW: 31114.9 Da    PI: 9.5378
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G846057_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.5e-19115165256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr++  +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ +l+ge
  GRMZM5G846057_P01 115 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAHRLRGE 165
                        59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.89E-29114172No hitNo description
Gene3DG3DSA:3.30.730.109.3E-30115172IPR001471AP2/ERF domain
PROSITE profilePS5103222.695115172IPR001471AP2/ERF domain
SMARTSM003804.0E-31115178IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22115172IPR016177DNA-binding domain
PfamPF008473.9E-13116165IPR001471AP2/ERF domain
PRINTSPR003672.2E-9116127IPR001471AP2/ERF domain
PRINTSPR003672.2E-9138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009084anatomypericarp
PO:0020127anatomyprimary root
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDASLRTLPP AGTSSFPGEV RSAVSSLLLS SPGTSALDTV FSHLPPPVTI PPLGSSVYYR  60
QCELLRHFAA SQSQPQARQH AAACSASSSS PSSAAASSFQ FQQSVPPDDM LRQKLYRGVR  120
QRQWGKWVAE IRLPQNRVRV WLGTYDSPET AAHAYDRAAH RLRGEYARLN FPGAMDGPDP  180
DCPEHLRHLR AAVDAKIQAI RARMARKRAR ARRQREERVS ARSGLQAASE GAATTTTTTT  240
TSETSAATPC GSPDGVLSVS AASGVADCPL ERMPSFDPEL IWEMLNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-18112172263ATERF1
3gcc_A6e-18112172263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204210ARKRARA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G846057
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G846057_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0389880.0BT038988.1 Zea mays full-length cDNA clone ZM_BFb0347O12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140517.10.0uncharacterized protein LOC100272581
TrEMBLB4FPF00.0B4FPF0_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM5G846057_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-31ERF family protein