PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G842961_P01
Common NameEREB30, LOC103627501
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 277aa    MW: 28835 Da    PI: 5.5517
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G842961_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.3e-1794143255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  GRMZM5G842961_P01  94 TFRGVRMRV-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 143
                        59****999.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.73494151IPR001471AP2/ERF domain
SMARTSM003807.5E-3794157IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2094152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-3194152IPR001471AP2/ERF domain
PfamPF008471.7E-1195143IPR001471AP2/ERF domain
PRINTSPR003676.8E-1095106IPR001471AP2/ERF domain
CDDcd000187.31E-3095153No hitNo description
PRINTSPR003676.8E-10117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEADALLHAP MTSSSSSSSS SSDSVGGSCV VNGAQELPSN TGKPHKNVKR KRTASPSAAP  60
GGGVAPAPPE AAIADDDCGG RRRKRGSAGT RHPTFRGVRM RVWGKWVSEI REPRKKSRIW  120
LGTFPTAEMA ARAHDVAALA IKGRGAHLNF PHLAHDLPRP ASTSPADIQA AAAKAAAAAA  180
DADVEVEQCE SSHAVETPSS SAASSEEVAA ASNAEEMSVL FDLPDLLMDL SDGLWSPIWA  240
AAPAAVEEYD GGDSLSEPLL WAHEHCWLDA AAPVQPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1877152273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1035090.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G842961
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G842961_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278190.0KJ727819.1 Zea mays clone pUT5771 AP2-EREBP transcription factor (EREB30) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646010.10.0ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ76e-51ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A060D1W70.0A0A060D1W7_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM5G842961_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]