PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G839969_P01 | ||||||||
Common Name | LOC103628691, MADS66 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 287aa MW: 30574.1 Da PI: 7.6021 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.6 | 7.6e-19 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r tf kRr+g++KKA+EL +LCd++++v++++ GRMZM5G839969_P01 11 IANDSTRRATFKKRRKGLMKKASELATLCDVDACVVVYGD 50 89************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.0E-23 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.446 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.1E-24 | 1 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.27E-33 | 2 | 86 | No hit | No description |
PRINTS | PR00404 | 5.6E-11 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.8E-19 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-11 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-11 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MARKKVTLQW IANDSTRRAT FKKRRKGLMK KASELATLCD VDACVVVYGD GESQPEVWPD 60 DVAKAAQVLA RFKAMPELDQ CKKMMDMEGF LNQRIDKLRE QLRKARRENH ERETALLLHD 120 AIAGRRPGLA GLSVEEIAGL GWMVENRLNG VKDAIERLQA ATAGKGGQDV VLPDPATATT 180 NLQLQLPQVS LLPLVPYSVD APAEHGHAGV VHEAAAQPQA PSWLMEVAKA GGDLGALVYS 240 GFGGGRGSFG GAGGTSVGVV ADMLPHLGNL GAGFGWADPG LSPFPPI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVTLQWIANDSTRRATFKKRR |
2 | 21 | 25 | KKRRK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G839969 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G839969_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727526 | 0.0 | KJ727526.1 Zea mays clone pUT5386 MADS transcription factor (MADS66) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008647071.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A060D0N9 | 0.0 | A0A060D0N9_MAIZE; Agamous-like MADS-box protein AGL80 (Fragment) | ||||
TrEMBL | A0A3L6ENA8 | 0.0 | A0A3L6ENA8_MAIZE; Agamous-like MADS-box protein AGL80 | ||||
STRING | GRMZM5G839969_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 6e-36 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G839969_P01 |
Entrez Gene | 103628691 |