PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G839518_P03
Common NameZm.95992
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 425aa    MW: 44953.3 Da    PI: 4.9059
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G839518_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.9e-12309354555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h+++Er RR++i +++ +L+el+P++      + +Ka++L + +eY+k Lq
  GRMZM5G839518_P03 309 HSIAERLRREKISDRMKNLQELVPNS-----NRTDKASMLDEIIEYVKFLQ 354
                        99***********************7.....59*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-16302360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.13E-13302358No hitNo description
PROSITE profilePS5088817.079304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-15306358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-9309354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDGFVDPFVP EQAWPQDAMF IGSSWPCAGA GATSLADPAG TYAYLGAQAA PGQGAGFHLQ  60
DGSSTALVPP LELHQQFLSA HLPGDDVTVT QEEGLGFEVN SALVAGMLGP VLSAPCAVSL  120
ADSAPVVCSS SNDSSGGSEQ SGLPPPPRFL VLGEQPASWP SAFPRISSLA GEETSRSFGF  180
GAVSDNDLVR GSSCVADVNK YPQIGNARLH VEDDVEFNTG KMLSFAPGLD FGDLQLSQKE  240
LSGLRHLNSG QQLSSFDATR NPEQSSNEAS GGGTGLNAPP FMVPANGAAG NGAPKPRVRA  300
RRGQATDPHS IAERLRREKI SDRMKNLQEL VPNSNRTDKA SMLDEIIEYV KFLQLQVKVR  360
SPRPTIPLLC SMRSGLLSCK VSADLCCLPV IEGSQHEQAG RDGSRRPAPY TVSDRELRWW  420
SSAVP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.959920.0ear| endosperm| meristem| pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G839518
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G839518_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749560.0EU974956.1 Zea mays clone 461679 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645842.10.0uncharacterized protein LOC103627314 isoform X2
TrEMBLA0A1D6HAY70.0A0A1D6HAY7_MAIZE; Transcription factor bHLH69
TrEMBLA0A3L6EV470.0A0A3L6EV47_MAIZE; Transcription factor bHLH82
STRINGGRMZM5G839518_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.15e-35LJRHL1-like 3