PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G839518_P02 | ||||||||
Common Name | LOC103627314, Zm.95992 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 489aa MW: 51005.1 Da PI: 4.7989 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 309 | 354 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ + +Ka++L + +eY+k Lq GRMZM5G839518_P02 309 HSIAERLRREKISDRMKNLQELVPNS-----NRTDKASMLDEIIEYVKFLQ 354 99***********************7.....59*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.25E-12 | 302 | 358 | No hit | No description |
SuperFamily | SSF47459 | 7.07E-17 | 302 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.079 | 304 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-16 | 306 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.3E-9 | 309 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-13 | 310 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MDGFVDPFVP EQAWPQDAMF IGSSWPCAGA GATSLADPAG TYAYLGAQAA PGQGAGFHLQ 60 DGSSTALVPP LELHQQFLSA HLPGDDVTVT QEEGLGFEVN SALVAGMLGP VLSAPCAVSL 120 ADSAPVVCSS SNDSSGGSEQ SGLPPPPRFL VLGEQPASWP SAFPRISSLA GEETSRSFGF 180 GAVSDNDLVR GSSCVADVNK YPQIGNARLH VEDDVEFNTG KMLSFAPGLD FGDLQLSQKE 240 LSGLRHLNSG QQLSSFDATR NPEQSSNEAS GGGTGLNAPP FMVPANGAAG NGAPKPRVRA 300 RRGQATDPHS IAERLRREKI SDRMKNLQEL VPNSNRTDKA SMLDEIIEYV KFLQLQVKVL 360 SMSRLGATEA VVPLLTQSQT ENSGGGLLLS PRSGSGRQQQ ARGGSLPPPS SEVRDGAAFE 420 QEVAQLMESD MTTAMQYLQS KGLCLMPVAL ASAISGQKGA SSAAVQPENG GAKEMLRAVK 480 PLASPIHGR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.95992 | 0.0 | ear| endosperm| meristem| pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G839518 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G839518_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974956 | 0.0 | EU974956.1 Zea mays clone 461679 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008645842.1 | 0.0 | uncharacterized protein LOC103627314 isoform X2 | ||||
TrEMBL | A0A1D6HAY7 | 0.0 | A0A1D6HAY7_MAIZE; Transcription factor bHLH69 | ||||
STRING | GRMZM5G839518_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3254 | 38 | 79 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 2e-54 | LJRHL1-like 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G839518_P02 |
Entrez Gene | 103627314 |