PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G834874_P02
Common NameZm.86419
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 817aa    MW: 91122.7 Da    PI: 6.9687
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G834874_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.48.3e-117528113597
                        EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                 B3  35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                         ++l+d++ r W v +    +   + +t+GWk+Fv +n+L++gD++ +   ++ +++e+v +v+
  GRMZM5G834874_P02 752 VIMLKDPKKRLWPVVY--HDSLLFVGFTAGWKHFVASNDLRAGDVCELV--KEpDDGEPVYSVR 811
                        5899************..999999**********************998..5668888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.051205298IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-12208299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-11218300IPR015300DNA-binding pseudobarrel domain
CDDcd100175.39E-6238295No hitNo description
Gene3DG3DSA:2.40.330.102.6E-10721803IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-10751812IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-7752811IPR003340B3 DNA binding domain
CDDcd100171.58E-9752811No hitNo description
PROSITE profilePS508639.812753814IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MGGGNEFLVG MTGSAPDSAR QKRCHDTANG EVRDGDTVVK NGKTSDAASV EKREKKEHLF  60
KCSAYHGKDT DMWSGDQRIN KSRVPAALCE QGREMDDDLN KTNSKERMMG VELDKEKTIT  120
SDDCSKVEGK KKFNTASPEE ERKKKPHNAS TGKNMQRDDD KEVVRIMSNS DTKVKIKKVS  180
TPLPKKEKNK EKLNKTYREK KMQAADSKMR SCYSGVKKGK VIPRIVAPRL EYLTNQLVYL  240
KDSKGKCLKV LVSKVVDSLA FDQGWDVFVS NHLIKWGEFL LFEYIAERTF SVRVFGTDSC  300
ERLDFNPEST NKGETKKQAW SNMPPDDLVV TDGISENSGY YVSGECPRTK VPQTCHVTCN  360
TKKDPKRVER VVGSGPVAQD ISGNLIGPQC KTKGTPLCSK GKTVIMIIDS EDSEPSAHEK  420
EDTMKLATSG PDSDISLVAV NTNEDPIRAQ SGIGNGPSAV LADEKGNFPE IECGTKCISA  480
TCSEVKTVSQ IISATALLDL HDSDENLGRK QRTNAIPLDS RTTAEDYHNY SKMIIIQNFN  540
RKYEAPGGFR CLEKWRKDVV NNQTALDCTA PIKHENPQKT DGMLVDGYGL IELNPVDEYI  600
CSEGNHECVQ PVFTMPIKEP SSADRVIDCG RDGTEINYSI NEKDGGTTAQ FETKMDQAEP  660
ARSGVRSKIC NSVVPANESE HRSTKQEGRM SSNREVPESL LPTKDEIPEP DHHSPPEINF  720
QLCIPDTTQK WLDLSKSLSN AVRRQRRHDY DVIMLKDPKK RLWPVVYHDS LLFVGFTAGW  780
KHFVASNDLR AGDVCELVKE PDDGEPVYSV RMSDHKI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129144KKKFNTASPEEERKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.864190.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G834874
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G834874_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT9896782e-83KT989678.1 Zea mays centromere 10 B73 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020394171.10.0B3 domain-containing protein Os02g0598200 isoform X2
TrEMBLA0A1D6HCB70.0A0A1D6HCB7_MAIZE; B3 domain-containing protein
STRINGGRMZM5G834874_P010.0(Zea mays)