PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G834874_P01 | ||||||||
Common Name | Zm.86419 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 937aa MW: 104187 Da PI: 7.0309 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.1 | 9.9e-11 | 872 | 931 | 35 | 97 |
EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 ++l+d++ r W v + + + +t+GWk+Fv +n+L++gD++ + ++ +++e+v +v+ GRMZM5G834874_P01 872 VIMLKDPKKRLWPVVY--HDSLLFVGFTAGWKHFVASNDLRAGDVCELV--KEpDDGEPVYSVR 931 5899************..999999**********************998..5668888888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.051 | 205 | 298 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-12 | 208 | 299 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-11 | 218 | 300 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.37E-6 | 238 | 295 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-10 | 841 | 923 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-10 | 871 | 932 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-7 | 872 | 931 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.90E-9 | 872 | 931 | No hit | No description |
PROSITE profile | PS50863 | 9.812 | 873 | 934 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 937 aa Download sequence Send to blast |
MGGGNEFLVG MTGSAPDSAR QKRCHDTANG EVRDGDTVVK NGKTSDAASV EKREKKEHLF 60 KCSAYHGKDT DMWSGDQRIN KSRVPAALCE QGREMDDDLN KTNSKERMMG VELDKEKTIT 120 SDDCSKVEGK KKFNTASPEE ERKKKPHNAS TGKNMQRDDD KEVVRIMSNS DTKVKIKKVS 180 TPLPKKEKNK EKLNKTYREK KMQAADSKMR SCYSGVKKGK VIPRIVAPRL EYLTNQLVYL 240 KDSKGKCLKV LVSKVVDSLA FDQGWDVFVS NHLIKWGEFL LFEYIAERTF SVRVFGTDSC 300 ERLDFNPEST NKGETKKQAW SNMPPDDLVV TDGISENSGY YVSGECPRTK VPQTCHVTCN 360 TKKDPKRVER VVGSGPVAQD ISGNLIGPQC KTKGTPLCSK GKTVIMIIDS EDSEPSAHEK 420 EDTMKLATSG PDSDISLVAV NTNEDPIRAQ SGIGNGPSAV LADEKGNFPE IECGTKCISA 480 TCSEVKTVSQ IISATALLDL HDSDENLGRK QRTNAIPLDS RTTAEDYHNY SKMIIIQNFN 540 RKYEAPGGFR CLEKWRKDVV NNQTALDCTA PIKHENPQKT DGMLVDGYGL IELNPVDEYI 600 CSEGNHECVQ PVFTMPIKEP SSADRVIDCG RDGTEINYSI NEKDGEVDTK CIQTRPYDVK 660 ASVLFHSKEE EFIAVVLLFY LKQKENKPMG SIVHSQSNNV WLSANPVVAG KYAALGLNPS 720 RSEGSCAFIE SMLTGSIEKT SSPDEISKCK NSMMETAHNV NGKGGGTTAQ FETKMDQAEP 780 ARSGVRSKIC NSVVPANESE HRSTKQEGRM SSNREVPESL LPTKDEIPEP DHHSPPEINF 840 QLCIPDTTQK WLDLSKSLSN AVRRQRRHDY DVIMLKDPKK RLWPVVYHDS LLFVGFTAGW 900 KHFVASNDLR AGDVCELVKE PDDGEPVYSV RMSDHKI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 144 | KKKFNTASPEEERKKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.86419 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G834874 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G834874_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT989678 | 2e-83 | KT989678.1 Zea mays centromere 10 B73 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021315763.1 | 0.0 | B3 domain-containing protein Os02g0598200 | ||||
TrEMBL | A0A1D6HCB9 | 0.0 | A0A1D6HCB9_MAIZE; B3 domain-containing protein | ||||
TrEMBL | A0A3L6EPY9 | 0.0 | A0A3L6EPY9_MAIZE; B3 domain-containing protein | ||||
STRING | GRMZM5G834874_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12272 | 27 | 30 | Representative plant | OGRP14587 | 4 | 4 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G834874_P01 |