PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G834596_P05
Common NameLOC100274169, LOC101027144
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family DBB
Protein Properties Length: 352aa    MW: 36806 Da    PI: 5.3254
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G834596_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.1e-06444539
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        C+ +e  e++l C  ++  lC+ C    H        H +
  GRMZM5G834596_P05  4 LCSACEAAEARLLCCADEAALCARCDRDVHAAnrlagkHHR 44
                       7******99******************99955677778554 PP

2zf-B_box30.95.7e-105595337
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                       +++C+ ++e ++ +fC +++ llC+ C ++ H        H
  GRMZM5G834596_P05 55 APNCDICQEAHAYFFCVEDRALLCRACDMAVHTAnafvsaH 95
                       689****************************9545566666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.5E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.736147IPR000315B-box-type zinc finger
CDDcd000214.36E-7347No hitNo description
PROSITE profilePS501199.62753100IPR000315B-box-type zinc finger
SMARTSM003361.2E-1453100IPR000315B-box-type zinc finger
PfamPF006436.7E-85587IPR000315B-box-type zinc finger
CDDcd000216.09E-1058100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MKVLCSACEA AEARLLCCAD EAALCARCDR DVHAANRLAG KHHRLPLLPP DDVSAPNCDI  60
CQEAHAYFFC VEDRALLCRA CDMAVHTANA FVSAHRRFLL TGVQVGLQPA AAAQDADPHP  120
PAAAEPLQTP PPPDRKAAAA GDGSSPALLY SDDDIDWAAG ADAGGGVSVA VTLPDWSLVH  180
EQFGAPPVVP RHADPALART PSSKRSPRRS VAAAFTVQGG GGLAGGLPDW PLDEFFGFSE  240
YSAGLAFAEN DTSKADSGKL GSTDGSPAGR PSSDASQDFF GQVPEFHQWS VPELPSPPTA  300
SGLHWQGGPR HGAATTTDVA AVFVPDISSP ENPFWCYATA AGQAPTKRRR RC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.853020.0ovary| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G834596
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G834596_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424800.0BT042480.1 Zea mays full-length cDNA clone ZM_BFb0287P19 mRNA, complete cds.
GenBankBT0642770.0BT064277.1 Zea mays full-length cDNA clone ZM_BFc0155A07 mRNA, complete cds.
GenBankBT0668550.0BT066855.1 Zea mays full-length cDNA clone ZM_BFb0081H14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266566.20.0ORPHAN transcription factor
TrEMBLB4FZE20.0B4FZE2_MAIZE; ORPHAN transcription factor
STRINGGRMZM5G834596_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.16e-30light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]