PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G834596_P03
Common NameLOC100274169, LOC101027144
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family DBB
Protein Properties Length: 352aa    MW: 36806 Da    PI: 5.3254
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G834596_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.1e-06444539
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        C+ +e  e++l C  ++  lC+ C    H        H +
  GRMZM5G834596_P03  4 LCSACEAAEARLLCCADEAALCARCDRDVHAAnrlagkHHR 44
                       7******99******************99955677778554 PP
2zf-B_box30.95.7e-105595337
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                       +++C+ ++e ++ +fC +++ llC+ C ++ H        H
  GRMZM5G834596_P03 55 APNCDICQEAHAYFFCVEDRALLCRACDMAVHTAnafvsaH 95
                       689****************************9545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.5E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.736147IPR000315B-box-type zinc finger
CDDcd000214.36E-7347No hitNo description
PROSITE profilePS501199.62753100IPR000315B-box-type zinc finger
SMARTSM003361.2E-1453100IPR000315B-box-type zinc finger
PfamPF006436.7E-85587IPR000315B-box-type zinc finger
CDDcd000216.09E-1058100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MKVLCSACEA AEARLLCCAD EAALCARCDR DVHAANRLAG KHHRLPLLPP DDVSAPNCDI  60
CQEAHAYFFC VEDRALLCRA CDMAVHTANA FVSAHRRFLL TGVQVGLQPA AAAQDADPHP  120
PAAAEPLQTP PPPDRKAAAA GDGSSPALLY SDDDIDWAAG ADAGGGVSVA VTLPDWSLVH  180
EQFGAPPVVP RHADPALART PSSKRSPRRS VAAAFTVQGG GGLAGGLPDW PLDEFFGFSE  240
YSAGLAFAEN DTSKADSGKL GSTDGSPAGR PSSDASQDFF GQVPEFHQWS VPELPSPPTA  300
SGLHWQGGPR HGAATTTDVA AVFVPDISSP ENPFWCYATA AGQAPTKRRR RC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.853020.0ovary| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G834596
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G834596_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424800.0BT042480.1 Zea mays full-length cDNA clone ZM_BFb0287P19 mRNA, complete cds.
GenBankBT0642770.0BT064277.1 Zea mays full-length cDNA clone ZM_BFc0155A07 mRNA, complete cds.
GenBankBT0668550.0BT066855.1 Zea mays full-length cDNA clone ZM_BFb0081H14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266566.20.0ORPHAN transcription factor
TrEMBLB4FZE20.0B4FZE2_MAIZE; ORPHAN transcription factor
STRINGGRMZM5G834596_P030.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.16e-30light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]