PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G834596_P01 | ||||||||
Common Name | LOC100274169, LOC101027144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | DBB | ||||||||
Protein Properties | Length: 352aa MW: 36806 Da PI: 5.3254 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.2 | 5.1e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e e++l C ++ lC+ C H H + GRMZM5G834596_P01 4 LCSACEAAEARLLCCADEAALCARCDRDVHAAnrlagkHHR 44 7******99******************99955677778554 PP | |||||||
2 | zf-B_box | 30.9 | 5.7e-10 | 55 | 95 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++C+ ++e ++ +fC +++ llC+ C ++ H H GRMZM5G834596_P01 55 APNCDICQEAHAYFFCVEDRALLCRACDMAVHTAnafvsaH 95 689****************************9545566666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.5E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.736 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.36E-7 | 3 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.627 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.7E-8 | 55 | 87 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.09E-10 | 58 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MKVLCSACEA AEARLLCCAD EAALCARCDR DVHAANRLAG KHHRLPLLPP DDVSAPNCDI 60 CQEAHAYFFC VEDRALLCRA CDMAVHTANA FVSAHRRFLL TGVQVGLQPA AAAQDADPHP 120 PAAAEPLQTP PPPDRKAAAA GDGSSPALLY SDDDIDWAAG ADAGGGVSVA VTLPDWSLVH 180 EQFGAPPVVP RHADPALART PSSKRSPRRS VAAAFTVQGG GGLAGGLPDW PLDEFFGFSE 240 YSAGLAFAEN DTSKADSGKL GSTDGSPAGR PSSDASQDFF GQVPEFHQWS VPELPSPPTA 300 SGLHWQGGPR HGAATTTDVA AVFVPDISSP ENPFWCYATA AGQAPTKRRR RC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.85302 | 0.0 | ovary| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G834596 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G834596_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042480 | 0.0 | BT042480.1 Zea mays full-length cDNA clone ZM_BFb0287P19 mRNA, complete cds. | |||
GenBank | BT064277 | 0.0 | BT064277.1 Zea mays full-length cDNA clone ZM_BFc0155A07 mRNA, complete cds. | |||
GenBank | BT066855 | 0.0 | BT066855.1 Zea mays full-length cDNA clone ZM_BFb0081H14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266566.2 | 0.0 | ORPHAN transcription factor | ||||
TrEMBL | B4FZE2 | 0.0 | B4FZE2_MAIZE; ORPHAN transcription factor | ||||
STRING | GRMZM5G834596_P03 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1794 | 33 | 82 | Representative plant | OGRP1804 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 6e-30 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G834596_P01 |
Entrez Gene | 100274169 | 101027144 |
Publications ? help Back to Top | |||
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