PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G833253_P01
Common NameZEAMMB73_560862, Zm.125168
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 340aa    MW: 36251.5 Da    PI: 4.5983
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G833253_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-171663148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT++Ed +l+ +++++G  +W++ ++  g+ R++k+c++rw +yl
  GRMZM5G833253_P01 16 RGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYL 63
                       89******************************99************97 PP
2Myb_DNA-binding51.91.8e-1669114148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l
  GRMZM5G833253_P01  69 RGNFTDEEEEAIIRLHGLLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS51294151163IPR017930Myb domain
SuperFamilySSF466891.39E-2913110IPR009057Homeodomain-like
SMARTSM007173.0E-131565IPR001005SANT/Myb domain
PfamPF002498.8E-161663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-241770IPR009057Homeodomain-like
CDDcd001675.85E-111863No hitNo description
PROSITE profilePS5129425.44464118IPR017930Myb domain
SMARTSM007177.3E-1568116IPR001005SANT/Myb domain
PfamPF002491.5E-1469114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2671118IPR009057Homeodomain-like
CDDcd001671.07E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRGRAPCCA KVGLNRGSWT PQEDMRLIAY IQKHGHTNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTDEEEEAI IRLHGLLGNK WSKIAACLPG RTDNEIKNVW NTHLKKKVAQ  120
REKKKAGAGS GDAGTPATAP LSSATSSTTT HNSSGGSDSG DQCGTSREPD ATDVCPLQLE  180
DMDVSDMLVD GAPPAAQPMP SPSSSSSLTT CVGGVEELIE LPVIDIEPEI WSIIDGESAV  240
ARHGGDAAAP CTGTGTAVST SEAEEAAAND WWLENLEKEL GLWGYAEEDT QAHPDLLDHY  300
TGLSPLCALE GDPVSTYFQT GPAAAEPELL VVVEPSAVLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-28141182105C-Myb DNA-Binding Domain
1msf_C8e-28141182105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G833253
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G833253_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9741790.0EU974179.1 Zea mays clone 442099 myb-related protein Zm1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152187.10.0myb-related protein Zm1
SwissprotP200240.0MYB1_MAIZE; Myb-related protein Zm1
TrEMBLK7U3860.0K7U386_MAIZE; Myb-related protein Zm1
STRINGGRMZM5G833253_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.12e-64myb domain protein 63
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]