PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G832473_P01
Common NameLOC103650975
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 292aa    MW: 31208.6 Da    PI: 4.6344
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G832473_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM137.58.6e-4351411128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                        lppG+rF Pt+eel+++yL++k+++ + ++e+vi+ vd+y+v+P +Lp          + ++e + w++F++r++++a+g r++r+t sgyW
  GRMZM5G832473_P01   5 LPPGYRFYPTEEELICFYLRNKLDNLRDDIERVIPVVDVYSVDPCQLPGihellcdggAGAGEGEPWFYFCPRQEREARGGRPSRTTPSGYW 96 
                        79****************************99****************557888877533346779************************** PP

                NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ka g+  +v+s++++++g+kkt+vfy grap+g+kt+W m+eyr+
  GRMZM5G832473_P01  97 KAAGTPGAVYSADRRAIGVKKTMVFYYGRAPSGTKTKWKMNEYRA 141
                        *******************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-473146IPR003441NAC domain
PROSITE profilePS5100544.7315197IPR003441NAC domain
PfamPF023658.2E-246140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAVGLPPGYR FYPTEEELIC FYLRNKLDNL RDDIERVIPV VDVYSVDPCQ LPGIHELLCD  60
GGAGAGEGEP WFYFCPRQER EARGGRPSRT TPSGYWKAAG TPGAVYSADR RAIGVKKTMV  120
FYYGRAPSGT KTKWKMNEYR AFQFETPGPG LGLAAAGVAA DGSSSSSAHH AADGPAPPPN  180
VGPQLRGEFS LCRLYTKSGS LRQFDRRPLA ATGGVVVPGE DPAGPFTAVA ASPPDDDDGS  240
GSSMQQQQQQ LTGGGANNDP YGDGVVTERE DAHDPFGDDV AMLDALLYWP GD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-30314315144NO APICAL MERISTEM PROTEIN
1ut4_B9e-30314315144NO APICAL MERISTEM PROTEIN
1ut7_A9e-30314315144NO APICAL MERISTEM PROTEIN
1ut7_B9e-30314315144NO APICAL MERISTEM PROTEIN
4dul_A9e-30314315144NAC domain-containing protein 19
4dul_B9e-30314315144NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G832473
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G832473_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0712741e-116AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674793.10.0NAC domain-containing protein 90
SwissprotQ9FMR33e-66NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A1D6N6K20.0A0A1D6N6K2_MAIZE; NAC domain-containing protein 90
STRINGGRMZM5G832473_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Representative plantOGRP22781136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-66NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]