PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G829103_P07
Common NameCA2P6, LOC100283565, Zm.97007
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YA
Protein Properties Length: 322aa    MW: 34122.6 Da    PI: 10.0538
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G829103_P07genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.53.5e-31165221158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        d+p+YVN+KQy++Il+RR +Rak+e+e++l +k+rkpylheSRh hA+rR Rg+gGrF
  GRMZM5G829103_P07 165 DAPIYVNPKQYEGILRRRRARAKAESENRL-AKGRKPYLHESRHLHAMRRVRGTGGRF 221
                        68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-34163224IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.76164224IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-22167189IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-27167221IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-22198221IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MMSFKGHEGF GQVAAAGAGS QAASHGGAGP LPWWAGPQLL FGEPAPPSPE ETRRDAQFQV  60
VPGVQGTPDP APPKTGTPEV LKFSVFQGNL ESGGKGEKTP KNSTTIALQS PFPEYNGRFE  120
IGLGQSMLAP SNYPCADQCY GMLAAYGMRS MSGGRMLLPL NATADAPIYV NPKQYEGILR  180
RRRARAKAES ENRLAKGRKP YLHESRHLHA MRRVRGTGGR FVNTKKEGRG TGVASNGGSK  240
TAAAAPSRLA MPPSFQSSVA SLSGSDVSNM YSGGLEQHLR APHFFTPLPP IMEDGDHGGP  300
PTRISSSFKW AASDGCCELL KA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-17165227264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A5e-17165222260HAPB protein
4g92_A5e-17165222260HAPB protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.970070.0embryo| endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G829103
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G829103_P07
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369770.0BT036977.1 Zea mays full-length cDNA clone ZM_BFb0150B05 mRNA, complete cds.
GenBankBT0419060.0BT041906.1 Zea mays full-length cDNA clone ZM_BFb0078A16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677578.10.0nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_008677580.10.0nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLB4FIN90.0B4FIN9_MAIZE; CCAAT-HAP2 transcription factor
STRINGGRMZM5G829103_P070.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.36e-28nuclear factor Y, subunit A10
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]