PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G829103_P06
Common NameLOC100283565, Zm.97007
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YA
Protein Properties Length: 298aa    MW: 31526.6 Da    PI: 10.4278
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G829103_P06genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.73e-31141197158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        d+p+YVN+KQy++Il+RR +Rak+e+e++l +k+rkpylheSRh hA+rR Rg+gGrF
  GRMZM5G829103_P06 141 DAPIYVNPKQYEGILRRRRARAKAESENRL-AKGRKPYLHESRHLHAMRRVRGTGGRF 197
                        68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-34139200IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.76140200IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.1E-22143165IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-27143197IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.1E-22174197IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MMSFKGHEGF GQVAAAGAGS QAASHGGAGP LPWWAGPQLL FGEPAPPSPE ETRRDAQFQV  60
VPGVQGTPDP APPKTGTPEV LKFSVFQGNL ESGGKGEKTP KNSTTIALQS PFPEYNGRFE  120
IGLGQSMSGG RMLLPLNATA DAPIYVNPKQ YEGILRRRRA RAKAESENRL AKGRKPYLHE  180
SRHLHAMRRV RGTGGRFVNT KKEGRGTGVA SNGGSKTAAA APSRLAMPPS FQSSVASLSG  240
SDVSNMYSGG LEQHLRAPHF FTPLPPIMED GDHGGPPTRI SSSFKWAASD GCCELLKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-17141203264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A4e-17141198260HAPB protein
4g92_A4e-17141198260HAPB protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.970070.0embryo| endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G829103
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G829103_P06
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0382990.0BT038299.1 Zea mays full-length cDNA clone ZM_BFb0224M21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677584.10.0nuclear transcription factor Y subunit A-10 isoform X2
RefseqXP_020407730.10.0nuclear transcription factor Y subunit A-10 isoform X2
TrEMBLB4FMG10.0B4FMG1_MAIZE; CCAAT-HAP2-transcription factor 26
STRINGGRMZM5G829103_P070.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.14e-24nuclear factor Y, subunit A6
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]