PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G825321_P02
Common NameLOC100382187
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 721aa    MW: 75225.5 Da    PI: 6.1163
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G825321_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS273.56.7e-843637203374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        + L ++A a + g+   a+++Larl+++  p g+p+ R a+y+ eAL   l++      ++ +++ ts+ +++ +l a+k fs++sP+l+f+
  GRMZM5G825321_P02 363 DELAAAAMAAEVGNSIGAREILARLNQQLPPIGKPLLRSASYLREALLLALTD-----GHQGSTRVTSPLDVALKLGAYKSFSDLSPVLQFA 449
                        68999************************************************.....55566677777779******************** PP

               GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                        ++ta qa+l+++++   +++ iiDfd++ G+QW+++lq+La R+    ++ p+l++T+++s++s++  el+ t+e+L++fA  lg+pfef++
  GRMZM5G825321_P02 450 NFTATQALLDEIASTtsSCIRIIDFDLGVGGQWASFLQELAYRRgtgnGPLPMLKLTAFVSSASHHPLELHLTRENLSQFAVDLGIPFEFTA 541
                        **********998877799**********************99988867789**************************************** PP

               GRAS 181 lvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                        +   +l+++++ eL   + +E++aV+l +          +l+     +L+lvk+l Pk+vv +++ +d+++ +F ++f+++++ ++ l+dsl
  GRMZM5G825321_P02 542 I---NLDAFDPAELIAPSaDEVVAVCLPVGCSART---PPLPM----LLQLVKQLAPKIVVAIDHGSDRGDLPFSQHFMNCFQSCMFLLDSL 623
                        9...999***999955547********99766554...56666....********************************************* PP

               GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                        +a  ++++++++k+Er+l++++++++v  + ++     e+++ Wr+ +++aGF pvpls+ a++qa++ll++v+++g++ve+    l l+W+
  GRMZM5G825321_P02 624 DAA-GTNADAASKIERFLIQPRVEDAVLGRRKA-----EKAMAWRAVFTSAGFAPVPLSNLAEAQADCLLKRVQVRGFHVEKCGMGLALYWQ 709
                        999.8999*******************988887.....999*************************************************** PP

               GRAS 364 drpLvsvSaWr 374
                        + +LvsvSaWr
  GRMZM5G825321_P02 710 RGELVSVSAWR 720
                        **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.644335700IPR005202Transcription factor GRAS
PfamPF035142.3E-81363720IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MRAAPFSADG NGAGTIEALL WPHGKGGGGG HLLLEPTSVL DCRRSPSPPY STSTLSSSLG  60
GAAGDSFSGV AAVSENSAAA AAEATKWAAP GEHGSGGGGG GSGGGRKEEW PGGDLPPIPG  120
ALDIGFVGEE GWDAMLGDAA AAAGQDQTFL NWIMAAPGDM EPPPPPPPLL GNAAGFGFPA  180
PDPLGFSLQH HPGGGGASAG ALASDLSSPG ARSLSGSSGS GSKATSTFGL LPTEAVLQPP  240
PPPAATTMRF HDGADIKPPL LGVPSAGLLH QHQTLPAASF FMPLPSFPDH QHQPHLPPPP  300
KRHHSMPDNL FLLQNQLQPP PSQGLPFPPL HTTTPFQLQP PLQPPRGAMK TTPAAQQHQQ  360
LLDELAAAAM AAEVGNSIGA REILARLNQQ LPPIGKPLLR SASYLREALL LALTDGHQGS  420
TRVTSPLDVA LKLGAYKSFS DLSPVLQFAN FTATQALLDE IASTTSSCIR IIDFDLGVGG  480
QWASFLQELA YRRGTGNGPL PMLKLTAFVS SASHHPLELH LTRENLSQFA VDLGIPFEFT  540
AINLDAFDPA ELIAPSADEV VAVCLPVGCS ARTPPLPMLL QLVKQLAPKI VVAIDHGSDR  600
GDLPFSQHFM NCFQSCMFLL DSLDAAGTNA DAASKIERFL IQPRVEDAVL GRRKAEKAMA  660
WRAVFTSAGF APVPLSNLAE AQADCLLKRV QVRGFHVEKC GMGLALYWQR GELVSVSAWR  720
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2343672080375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.957650.0ear| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G825321
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G825321_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634500.0BT063450.1 Zea mays full-length cDNA clone ZM_BFc0064F13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168417.10.0uncharacterized protein LOC100382187
TrEMBLC0P5810.0C0P581_MAIZE; Scarecrow-like protein 6
STRINGGRMZM5G825321_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-90GRAS family protein